Hi all,
I'm having a ridiculous problem, I suspect.
I aligned 25 genomes using progressivemauve. In attempting to subset the
LCBs in the output xmfa file output, I get the following error.
Here's the command:
stripSubsetLCBs pre_core.xmfa pre_core.xmfa.bbcols core.xmfa 500
Here's the error:
Exception FileNotOpened thrown from
Unknown() in gnFileSource.cpp 67
Called by Unknown()
Read 86063 backbone entries
seq_count is: 0
output_ivs.size() 3118
Segmentation fault: 11
It seems that the bbcols file is recognized, but that the xmfa file cannot
be loaded. The path to the file is correct...I checked this many times. I
changed the permissions on all of these files to full access, so this is
not the issue.I see that several other people have had this problem, but
have yet to find the solution. I've gotten this same error for several
different progressivemauve outputs (for several different alignments). Any
help would be so greatly appreciated!
Thanks,
Talia
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