Hi all, I am having a problem understanding the SNP file that is produced by the Mauve GUI. Basically, I'm getting a lot of duplicate SNP patterns (i.e., first column in the file). Is there something suspicious about this?
For example, suppose there are six genomes. I would have two rows like this: AACTAG 5 6 5 5 8 9 AACTAG 6 6 7 7 6 9 In practice, I'm working with over 50 genomes and out of 20,000 SNPs, I have a situation where a SNP pattern appears 100...even as high as 200 times. Does this look funny or am I perhaps misunderstanding something? Thank you in advance! Ray ------------------------------------------------- This e-mail is sent by CUHK WebMail http://webmail.cuhk.edu.hk ------------------------------------------------------------------------------ "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE Instantly run your Selenium tests across 300+ browser/OS combos. Get unparalleled scalability from the best Selenium testing platform available. Simple to use. Nothing to install. Get started now for free." http://p.sf.net/sfu/SauceLabs _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
