Hi everyone. Sorry if this has been asked before, but I can't seem to
install the snapshot using the mauve_installer_20120303.exe: error given
is "Could not detect a suitable 64-it Java Runtime environment. Mauve
requires Java version 1.4 or later..."
I'm running JRE 6 for 64-bit and also have JRE 7 installed for 32-bit.
Is there a solution?
Also, our supercomputer setup is not liking my command-line scripts.
Would somebody correct my script below for doing a multiple alignment?
(the full path is used in this example)
java -Xmx12000m /opt/mauve/20120607/prebuilt/Mauve.jar
/opt/mauve/20120607/prebuilt/progressiveMauve --output=3bugs.xmfa
--output-guide-tree=3bugs.tree --backbone-output=3bugs.backbone
bug1.gbff bug2.gbff bug3.gbff
I'm trying to throw more RAM at the alignment but am getting errors like
"Exception in thread "main" java.lang.NoClassDefFoundError:
/opt/mauve/20120607/prebuilt/Mauve/jar
Caused by: java.lang.ClassNotFoundException:
.opt.mauve.20120607.prebuilt.Mauve.jar"
(yes I see the "Mauve/jar" in place of the "Mauve.jar" but assume it's
just an error message)
Thanks!
--
-
Peter R. Hoyt, Ph. D.
Graduate Program Director, Bioinformatics Certification
Oklahoma State University
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