Hi Manal, The first two steps outlined on this page provide one example for how a collection of genomes can be aligned and from them a phylogeny inferred: http://code.google.com/p/clonalorigin/wiki/FromGenomeAssemblyToRecombination
Best, -Aaron On Tue, 2014-06-17 at 19:13 +1000, Manal Farid wrote: > Hi all- I need your advice please on how to get a tree based on the > conserved regions or on snps (following aligning with > progressiveMauve)?- thank you, manal > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
