Hello Berthold, On Mon, 2014-08-11 at 13:34 +0200, heinze wrote:
> genes (as per the GenBank file annotation). However, the exported file > just lists the coordinates of the GenBank genome, without any sign of > comparing to the second, fasta sequence. This is regardless of which > features I select (CDS, gene, tRNA, ...). An example: If the second genome has no features, then there aren't any features to list in the "orthologs" file. There's currently no means implemented in Mauve to predict where features in unannotated genomes should be when exporting a list of orthologous regions. This is functionality that has been proposed in the past and could be feasible to add to a future release. -Aaron -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
