Hi Peter,
These distance units are derived by counting the number of substitutions
in non-overlapping approximate multi-MUMs. I would avoid trying to
interpret them in any evolutionary context, they merely serve to help
progressiveMauve decide the order in which it aligns genomes.

-Aaron

On Fri, 2014-10-24 at 17:11 -0500, Peter Hoyt wrote:
> What are the distance units produced with the Progressive MAUVE Guide
> tree?
> 
> -- 
> 
> 
> Peter R. Hoyt, Ph. D. 
> Oklahoma State University 
> 
> 
> 
> 
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