Hi every one, I am trying to use mauve via command line for whole genome alignment; ./mauveAligner --weight=300 --output-alignment=fifty_isolates.alignment Autumn2013_ALT_17.gbk 1.gbk.sml Spring2012_ALT_27.gbk 2.gbk.sml --id-matrix= id_matrix.txt I get this error:
Error: Each sequence file must have a corresponding SML file specified. Indeed the sml files are non existent, however, and I quote the manual: "Each sequence must have a corresponding Sorted Mer List (SML) file name given. If the SML file does not exist, mauveAligner will create it." !!! Nothing in the options is related to SML file creation, what's the catch?! P.S. I'm using mauve only to get the identity matrix as an input to progressive mauve -- Norhan Mahfouz PhD student Bioinformatics (AG Schroeder) Technische Universität Dresden Biotechnology Center Tatzberg 47/49 01307 Dresden, Germany ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
