Hi again Aaron,
Trying to repeat the same alignments I have already done, I found a new error:
Exited with error code: 134
Thanks so much for our help
Cristina.
PD. Here you have the code:
-------------------
Running alignment.
Executing
/Applications/Mauve 2.4.0/Mauve.app/Contents/MacOS/progressiveMauve
--output=/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome
Comparison/DDBJ_WGS/MAUVE alignemnts/Glunacetobacter+Komatagaeibacter (18s)
--output-guide-tree=/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome
Comparison/DDBJ_WGS/MAUVE alignemnts/Glunacetobacter+Komatagaeibacter
(18s).guide_tree
--backbone-output=/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome
Comparison/DDBJ_WGS/MAUVE alignemnts/Glunacetobacter+Komatagaeibacter
(18s).backbone
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter azotocaptans DSM13594.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter diazotrophicus PA1 5 (BMC Genomics).gb
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter diazotrophicus PA1 5(DOE Joint).gb
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter europaeus LMG18890.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter hansenii NRIC0243.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter intermedius NRIC0521.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter johannae DSM13595.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter liquefaciens NRIC0522.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter nataicola NRIC0616.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter oboediens DMS11826.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter rhaeticus DSM16663.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter sacchari DMS12717.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter saccharivorans NRIC0614.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter sucrofermentans DSM15973.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter swingsii DSM16373.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Gluconacetobacter xylinus NBRC15237.gbk
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Komagataeibacter medellinensis NBRC 3288.gb
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE
Input sequences/Komagataeibacter xylinus E25.gb
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.000
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter azotocaptans DSM13594.gbk 4175457 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.001
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter diazotrophicus PA1 5 (BMC Genomics).gb 3944163 base
pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.002
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter diazotrophicus PA1 5(DOE Joint).gb 3887492 base
pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.003
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter europaeus LMG18890.gbk 4034014 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.004
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter hansenii NRIC0243.gbk 3739776 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.005
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter intermedius NRIC0521.gbk 3926803 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.006
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter johannae DSM13595.gbk 3645271 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.007
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter liquefaciens NRIC0522.gbk 4378946 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.008
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter nataicola NRIC0616.gbk 3656127 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.009
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter oboediens DMS11826.gbk 3919658 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.010
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter rhaeticus DSM16663.gbk 3463348 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.011
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter sacchari DMS12717.gbk 4906605 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.012
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter saccharivorans NRIC0614.gbk 3372925 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.013
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter sucrofermentans DSM15973.gbk 3379879 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.014
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter swingsii DSM16373.gbk 3757362 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.015
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Gluconacetobacter xylinus NBRC15237.gbk 3683670 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.016
Sequence loaded successfully.
/Users/Buthercup_ch/酢:Su/酢:Su-Projects/Genome Comparison/DDBJ_WGS/MAUVE Input
sequences/Komagataeibacter medellinensis NBRC 3288.gb 3136818 base pairs.
Storing raw sequence at
/var/folders/sr/w5fjtzj91t72f0kjm0s3ny9m0000gn/T/rawseq450.017
libc++abi.dylib: terminating with uncaught exception of type
std::ios_base::failure: failed mapping file: Invalid argument
Exited with error code: 134
-------------------------------
------------------------
Cristina Andres-Barrao, PhD.
cav00...@nodai.ac.jp
Laboratory of Fermentation Biochemistry
Department of Fermentation Sciences
Faculty of Applied Biosciences
Tokyo University of Agriculture
1-1-1 Sakuragaoka, Setagaya-ku
Tokyo 156-8502, Japan
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