Hi, I am currently analyzing alignment data from 50 bacterial genomes after applying progressive mauve for the alignment. I am processing the backbone file and I was wondering how can I integrate annotation information to this knowledge, for example : from the backbone file seq1 and seq5 have in common a stretch of nucleotides from 11658 to 11768 and 12340 to 12450 respectively - one can extract the actual string of nucleotides from the xmfa file, sure If I am using the annotated genomes, how can I extract which genes does this area belong two on each of the respective genomes?? Your input and ideas are highly appreciated! regards, Norhan
-- Norhan Mahfouz PhD student Bioinformatics (AG Schroeder) Technische Universität Dresden Biotechnology Center Tatzberg 47/49 01307 Dresden, Germany ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
