Hi Amarin, I realize this reply is coming a bit late but hopefully better late than never. There was a nasty bug in 2.4.0 which caused frequent crashes. It's fixed in a snapshot release that was made in late February. I've now linked the snapshot directly from the download page on the Mauve site: http://darlinglab.org/mauve/download.html
Hope this helps, -Aaron On Thu, 2015-04-23 at 06:42 +1000, Amarin Cogburn wrote: > Aaron, > > > > I can’t seem to get the latest version of Mauve to run on my windows > laptop or workstation. I've tried alignments using two different > bacterial genomes but the program exits with the same error code when > writing the guide tree each time. Any input would be appreciated. > Thanks. > > > > Running alignment. > > Executing > > win64\progressiveMauve > > --output=K12_TolC_Alignment > > --output-guide-tree=K12_TolC_Alignment.guide_tree > > --backbone-output=K12_TolC_Alignment.backbone > > C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa > > C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas > > C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas > > Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1401.tmp > > Sequence loaded successfully. > > C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa 4686137 base pairs. > > Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1662.tmp > > Sequence loaded successfully. > > C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas 4715635 base pairs. > > Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1808.tmp > > Sequence loaded successfully. > > C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas 4710259 base > pairs. > > Using weight 15 mers for initial seeds > > Creating sorted mer list > > Create time was: 2 seconds. > > Creating sorted mer list > > Create time was: 2 seconds. > > Creating sorted mer list > > Create time was: 2 seconds. > > 0%..1%..2%..3%..4%..5%..6%..7%..8%..9%..10%.. > > 11%..12%..13%..14%..15%..16%..17%..18%..19%..20%.. > > 21%..22%..23%..24%..25%..26%..27%..28%..29%..30%.. > > 31%..32%..33%..34%..35%..36%..37%..38%..39%..40%.. > > 41%..42%..43%..44%..45%..46%..47%..48%..49%..50%.. > > 51%..52%..53%..54%..55%..56%..57%..58%..59%..60%.. > > 61%..62%..63%..64%..65%..66%..67%..68%..69%..70%.. > > 71%..72%..73%..74%..75%..76%..77%..78%..79%..80%.. > > 81%..82%..83%..84%..85%..86%..87%..88%..89%..90%.. > > 91%..92%..93%..94%..95%..96%..97%..98%..99%..done. > > using default bp penalty: 155158 > > using default bp estimate min score: 465475 > > Starting with 1047 multi-matches > > Computing genome content distance matrix... > > > > > > Genome conservation distance matrix: > > 0 0.0771738 0.0795964 > > 0.0771738 0 0.0060033 > > 0.0795964 0.0060033 0 > > > > Writing guide tree to K12_TolC_Alignment.guide_tree > > Exited with error code: -1073741819 > > > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
