Hi Varduhi, Based on the information you have provided it is not clear why progressiveMauve would have terminated prematurely. I note that the stdout and stderr were directed to two files, mauvetrialoriginal.e358216 and mauvetrialoriginal.o358216
I suggest inspecting those files for clues and also checking whether your queuing system imposes any resource restrictions that could result in job termination. Best, -Aaron On Mon, 2015-11-16 at 14:02 -0600, Varduhi Petrosyan wrote: > Hello to whom it may concern, > > > > I am a new Mauve user and I am attempting to align 95 Streptococcus > mitis genomes using progressiveMauve. > > I am using the ELF 64-bit LSB executable, x86-64, version 1 (SYSV), > statically linked, for GNU/Linux 2.6.18, stripped version of > progressiveMauve. > > > The small sample set that I aligned worked, however when I align all > of the genomes I get the following error: > > BS Job Id: 358216.cnode341.mdanderson.edu > Job Name: mauvetrialoriginal > Exec host: cnode253/0 > Execution terminated > Exit_status=134 > resources_used.cput=00:00:25 > resources_used.energy_used=0 > resources_used.mem=206932kb > resources_used.vmem=815340kb > resources_used.walltime=00:00:28 > Error_Path: > cnode341.mdanderson.edu:/scratch/hlth_prof/vpetrosyan/scratch/Fasta/mauvetrialoriginal.e358216 > Output_Path: > cnode341.mdanderson.edu:/scratch/hlth_prof/vpetrosyan/scratch/Fasta/mauvetrialoriginal.o358216 > > > > Has anyone else run into this and is there any way to fix it ? > > > Thank you so much, > > > Varduhi Petrosyan > > ------------------------------------------------------------------------------ > Presto, an open source distributed SQL query engine for big data, initially > developed by Facebook, enables you to easily query your data on Hadoop in a > more interactive manner. Teradata is also now providing full enterprise > support for Presto. Download a free open source copy now. > http://pubads.g.doubleclick.net/gampad/clk?id=250295911&iu=/4140 > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email.
------------------------------------------------------------------------------
_______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
