Hello Users,
I have used progressive mauve to align 42 genomes and then used the
stripSubsetLCBs to extract the core genome. However, now when I try to open my
core alignment using the Mauve GUI it gives me an error.
Exception in thread "Thread-4" java.lang.ArrayIndexOutOfBoundsException: genome
E.fergusonii_ATCC.fasta position 1
at org.gel.mauve.XMFAAlignment.getLCB(Unknown Source)
at org.gel.mauve.XMFAAlignment.getRange(Unknown Source)
at org.gel.mauve.SimilarityIndex.calculateIndex(Unknown Source)
at org.gel.mauve.SimilarityIndex.<init>(Unknown Source)
at org.gel.mauve.XmfaViewerModel.init(Unknown Source)
at org.gel.mauve.XmfaViewerModel.<init>(Unknown Source)
at org.gel.mauve.ModelBuilder.buildModel(Unknown Source)
at org.gel.mauve.gui.FrameLoader.loadFile(Unknown Source)
at org.gel.mauve.gui.FrameLoader.run(Unknown Source)
at java.lang.Thread.run(Thread.java:745)
Any ideas on what the error is and how I can fix it.
Thanks for you time
Prabh------------------------------------------------------------------------------
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