Hi Joe, First of all, my apologies for getting back to you so late! A deadline that just passed kept me occupied the entire week...
Second, thanks a lot for replying to an old posting of mine -- that is very much appreciated! On Fri, Jul 15, 2016 at 7:17 AM, Joseph Fass <joseph.f...@gmail.com> wrote: > Raymond, you've probably figured this out already, but since I was looking > for discussion of these files, I'll answer your email. The SNP file doesn't > address gaps, doesn't depend on the contig mover. The three fields for every > genome represent the contig name (the fasta header line of the sequence > containing the position of the SNP), the position in that particular contig > (i.e. 1-based position of the SNP in that particular fasta entry), and the > position in the whole genome (i.e. if you concatenated all contigs in order > together into one sequence, what would be the coordinate of the SNP). This > last obviously applies to a "draft" or multi-chromosomal genome that > contains multiple fasta entries in one file; if you're dealing with a single > chromosome, then the "position in contig" and "genome-wide position" will > match. Unfortunately, I didn't figure out what you mentioned here. The project that I was using Mauve for is "on hold" for reasons completely unrelated to Mauve. I still would like to get back to it some day. Thank you for this explanation! It is useful information to know whenever I return to that project and I hope it is useful for others reading the list. Thank you! Ray ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports.http://sdm.link/zohodev2dev _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
