Greetings I intend to align genomes of Mycobacterium strains in order to find SNPs using MAUVE. Few genomes are complete and few are draft.
For the draft genomes. Should I reorder the contigs with the reference:? And which output file after reorder contigs should I use for the comparison with complete genomes. Thank you Best regards. -- Cristina Kraemer Zimpel Médica Veterinária, Especialista em Medicina Veterinária do Coletivo Mestranda em Epidemiologia Experimental Aplicada às Zoonoses Departamento de Medicina Veterinária Preventiva e Saúde Animal (VPS), FMVZ - USP Av. Prof. Dr. Orlando Marques de Paiva, 87 - Cidade Universitária São Paulo, SP, CEP 05508 270, Brasil
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