Hi, I am not using the command line (not sure if it run from the command as well). The version is MAUVE 2.4.0.
the message in the MAUVE console: after the alignment "done. root alignment has 84 superintervals root alignment length: 4924424 Organisms have 65.6% GC Completed without error. Alignment complete! set 20, 2016 4:18:13 PM java.util.prefs.WindowsPreferences <init> WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5." 2016-09-20 14:42 GMT-03:00 Joseph Fass <joseph.f...@gmail.com>: > Are you running the export from the GUI? (I'm not sure if there's a way to > run it from the command line) > Does it give you an error message in the GUI? > What build / version of Mauve are you using? > > ~Joe > > 2016-09-20 7:19 GMT-07:00 Cristina Kraemer Zimpel <criskzim...@gmail.com>: > >> >> Hi >> >> I performed the progressive alignment with 7 Mycobacterial genomes, and >> now I am trying to export gaps, unfortunately when I choose this option I >> have as result an empty file. >> Can anyone guide me here? >> Thank you >> -- >> Cristina Kraemer Zimpel >> >> Médica Veterinária, Especialista em Medicina Veterinária do Coletivo >> Mestranda do Departamento de Medicina Veterinária Preventiva e Saúde >> Animal (VPS) >> Universidade de São Paulo - Faculdade de Medicina Veterinária e Zootecnia >> Av. Prof. Dr. Orlando Marques de Paiva, 87 - Cidade Universitária >> São Paulo, SP, CEP 05508 270, Brasil >> >> >> ------------------------------------------------------------ >> ------------------ >> >> _______________________________________________ >> Mauve-users mailing list >> Mauve-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mauve-users >> >> > > > -- > Joseph Fass > Bioinformatics Data Analyst > UC Davis Genome Center - Bioinformatics Core > http://bioinformatics.ucdavis.edu/ > jnf...@ucdavis.edu > phone ~ 530.752.2698 > -- Cristina Kraemer Zimpel Médica Veterinária, Especialista em Medicina Veterinária do Coletivo Mestranda do Departamento de Medicina Veterinária Preventiva e Saúde Animal (VPS) Universidade de São Paulo - Faculdade de Medicina Veterinária e Zootecnia Av. Prof. Dr. Orlando Marques de Paiva, 87 - Cidade Universitária São Paulo, SP, CEP 05508 270, Brasil
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