Hi all,
I have some problems with SNP extraction from alignment of 48 genomes (the
output file remains empty).
I noticed, that we did not set the progressiveMauve to save the guide tree.
Could this play a role in SNP extract failing?
If so.. Is there a fast option to make a guide tree from the alignment or is it
easier to just run alignment again?
Thank you.
Best,
Aleksander
--
National Laboratory of Health, Environment and Food (NLZOH)
Prvomajska ulica 1, 2000 Maribor, Slovenia
tel: +386 (0)2 4500 175
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