Hi Gael, Thanks for your helpful comments. That method didn't work directly, but I was able to work around. For some reason, it would like me to report the x-dimension last to get a coherent image.
#Image.shape=(34,74,74) s=tvtk.ImageData(dimensions=(34,74,74), spacing=(1,1,1),origin=(0,0,0) #Volume filter creates nonsense s=tvtk.ImageData(dimensions=(74,74,34), spacing=(1,1,1),origin=(0,0,0) #Looks reasonable, may be rotated? s.point_data.scalars=Image.ravel() For those reading along, I follow this with mlab.pipeline.volume(s) or self.scene.mlab.pipeline.volume(s) #in an object oriented script Do you know what's going on? This reminds me of how when I call skimage.io.imread(image_file), the 'x' coordinate of Image is usually what I would think of as the 'z' coordinate in other viewers like imagej. Thanks, Chris On Wed, Jul 29, 2015 at 12:59 AM, Gael Varoquaux < gael.varoqu...@normalesup.org> wrote: > Replace the creationg of "s" by instanciating an ImageData: > > http://docs.enthought.com/mayavi/mayavi/data.html#imagedata > > That should do it, > > G > > On Tue, Jul 28, 2015 at 06:02:07PM -0500, Christopher Snyder wrote: > > Hi there, > > > My usual routine involves > > ix,iy,iz=np.indices(Image) > > > s=mlab.pipeline.scalar_field(spacing[0]*ix,spacing[1]*iy,spacing[2]*iz,Image) > > mlab.pipeline(volume(s)) > > > However, I am strapped for memory. Actually forming the indices ix,iy,iz > is > > putting a burden on my code. Is there some workaround, perhaps through > the > > depths of vtk, that lets me specify this with just the scalar tuple > (1,1,2) ??? > > > > > Thanks in anticipation, > > Chris Snyder > > > > ------------------------------------------------------------------------------ > > > _______________________________________________ > > MayaVi-users mailing list > > MayaVi-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/mayavi-users > > > -- > Gael Varoquaux > Researcher, INRIA Parietal > NeuroSpin/CEA Saclay , Bat 145, 91191 Gif-sur-Yvette France > Phone: ++ 33-1-69-08-79-68 > http://gael-varoquaux.info http://twitter.com/GaelVaroquaux >
------------------------------------------------------------------------------
_______________________________________________ MayaVi-users mailing list MayaVi-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mayavi-users
