ArthurPSmith has uploaded a new change for review.
https://gerrit.wikimedia.org/r/275521
Change subject: Updated nuclides charts to display using SVG; includes some
refactoring into common components
......................................................................
Updated nuclides charts to display using SVG; includes some refactoring into
common components
Change-Id: I35f83888f486ed66c1b6ca264966992755147fc6
---
M app.py
M nuclides.py
M static/nuclides.css
M templates/nuclide_decays.html
M templates/nuclides.html
A templates/nuclides_common.html
6 files changed, 248 insertions(+), 152 deletions(-)
git pull ssh://gerrit.wikimedia.org:29418/labs/tools/ptable
refs/changes/21/275521/1
diff --git a/app.py b/app.py
index 6b9d1eb..dddd4cc 100644
--- a/app.py
+++ b/app.py
@@ -69,20 +69,28 @@
@app.route('/nuclides')
def nuclides():
- """Render the chart of the nuclides."""
+ """Render the chart of the nuclides by half-life."""
nuclides, table, incomplete = app.nuclide_provider.get_table()
app.nuclide_provider.decorate_by_halflife(nuclides)
- return render_template('nuclides.html', table=table,
- incomplete=incomplete, **fake_globals)
+ return render_nuclides(nuclides, 'nuclides.html', incomplete)
@app.route('/nuclide_decays')
def nuclide_decays():
- """Render the chart of the nuclides."""
+ """Render the chart of the nuclides by decay mode."""
nuclides, table, incomplete = app.nuclide_provider.get_table()
app.nuclide_provider.decorate_by_decay_mode(nuclides)
- return render_template('nuclide_decays.html', table=table,
- incomplete=incomplete, **fake_globals)
+ return render_nuclides(nuclides, 'nuclide_decays.html', incomplete)
+
+
+def render_nuclides(nuclides, template_file, incomplete):
+ magic_numbers = app.nuclide_provider.get_magic_numbers()
+ max_neutrons = max(map(lambda nuclide: nuclide.neutron_number, nuclides))
+ max_protons = max(map(lambda nuclide: nuclide.atomic_number, nuclides))
+ return render_template(template_file, nuclide_list=nuclides,
+ magic_numbers=magic_numbers,
max_neutrons=max_neutrons,
+ max_protons=max_protons, incomplete=incomplete,
+ **fake_globals)
@app.route('/license')
diff --git a/nuclides.py b/nuclides.py
index 7ec44f7..04e2dce 100644
--- a/nuclides.py
+++ b/nuclides.py
@@ -205,6 +205,21 @@
for item_id, nuclide in nuclides.items():
yield nuclide
+ def get_magic_numbers(self):
+ magic_query = "PREFIX wdt: <http://www.wikidata.org/prop/direct/> \
+PREFIX wd: <http://www.wikidata.org/entity/> \
+SELECT ?magic_number WHERE {{ \
+ ?number wdt:P{0} wd:Q{1} ; \
+ wdt:P{2} ?magic_number . \
+}} ORDER by ?magic_number".format(Nuclide.instance_pid, Nuclide.magic_qid,
+ Nuclide.numeric_pid)
+ query_result = self.get_sparql(magic_query)
+ magic_numbers = []
+ for magic_result in query_result:
+ magic_number = magic_result['magic_number']['value']
+ magic_numbers.append(int(magic_number))
+ return magic_numbers
+
class WdqNuclideProvider(WdqBase, NuclideProvider):
"""Load nuclides from Wikidata Query."""
@@ -306,6 +321,8 @@
isotope_qid = 25276 # top-level class under which all isotopes to be found
stable_qid = 878130 # id for stable isotope
isomer_qid = 846110 # metastable isomers all instances of this
+ magic_qid = 11606 # magic number of nucleons for stability
+ numeric_pid = 1181
def __init__(self, **kwargs):
self.decay_modes = []
diff --git a/static/nuclides.css b/static/nuclides.css
index ccd36f2..442b2db 100644
--- a/static/nuclides.css
+++ b/static/nuclides.css
@@ -169,3 +169,139 @@
td.nuclide.spontaneous-fission {
background: #f00;
}
+
+rect.nuclide{
+ fill: #e8e8e8;
+}
+
+rect.nuclide.stable {
+ fill: #000;
+}
+
+rect.nuclide.hl1e9 {
+ fill: #008;
+}
+
+rect.nuclide.hl1e6 {
+ fill: #00c;
+}
+
+rect.nuclide.hl1e3 {
+ fill: #00f;
+}
+
+rect.nuclide.hl1e2 {
+ fill: #04c;
+}
+
+rect.nuclide.hl1e1 {
+ fill: #088;
+}
+
+rect.nuclide.hl1e0 {
+ fill: #0c4;
+}
+
+rect.nuclide.hl1e-1 {
+ fill: #0f0;
+}
+
+rect.nuclide.hl1e-2 {
+ fill: #4c4;
+}
+
+rect.nuclide.hl1e-3 {
+ fill: #8f8;
+}
+
+rect.nuclide.hl1e-6 {
+ fill: #cf6;
+}
+
+rect.nuclide.hl1e-9 {
+ fill: #ff0;
+}
+
+rect.nuclide.hl1e-12 {
+ fill: #f93;
+}
+
+rect.nuclide.hl1e-15 {
+ fill: #c60;
+}
+
+rect.nuclide.hl1e-18 {
+ fill: #f60;
+}
+
+rect.nuclide.hl1e-21 {
+ fill: #f00;
+}
+
+table#nuclides rect.x_axis {
+ font-size: 5px;
+ transform: rotate(90.0deg);
+}
+table#nuclides rect.y_axis {
+ font-size: 5px;
+}
+
+rect.nuclide.beta-minus {
+ fill: #0ac;
+}
+
+rect.nuclide.double-beta {
+ fill: #00c;
+}
+
+rect.nuclide.neutron-emission {
+ fill: #00f;
+}
+
+rect.nuclide.2-neutron-emission{
+ fill: #04c;
+}
+
+rect.nuclide.3-neutron-emission {
+ fill: #088;
+}
+
+rect.nuclide.4-neutron-emission {
+ fill: #0c4;
+}
+
+rect.nuclide.positron-emission {
+ fill: #0f0;
+}
+
+rect.nuclide.electron-capture {
+ fill: #4c4;
+}
+
+rect.nuclide.double-electron-capture {
+ fill: #8f8;
+}
+
+rect.nuclide.proton-emission {
+ fill: #cf6;
+}
+
+rect.nuclide.2-proton-emission {
+ fill: #ff0;
+}
+
+rect.nuclide.3-proton-emission {
+ fill: #f93;
+}
+
+rect.nuclide.alpha-decay {
+ fill: #c60;
+}
+
+rect.nuclide.double-alpha-decay {
+ fill: #f60;
+}
+
+rect.nuclide.spontaneous-fission {
+ fill: #f00;
+}
diff --git a/templates/nuclide_decays.html b/templates/nuclide_decays.html
index a41fc48..62e697c 100644
--- a/templates/nuclide_decays.html
+++ b/templates/nuclide_decays.html
@@ -1,74 +1,6 @@
-{% extends "base.html" %}
-{%- macro wd_url(nuclide) -%}
- //www.wikidata.org/wiki/{{ nuclide.item_id }}
-{%- endmacro -%}
-{%- macro format_cell(cell) -%}
- {%- if isinstance(cell, NoneCell) -%}
- <td class="empty"></td>
- {%- elif isinstance(cell, NuclideCell) -%}
- <td title="{{ cell.label }}" class="nuclide {% for class in
cell.classes %} {{ class }}{% endfor %}"> <a href="{{ wd_url(cell)
}}"> </a> </td>
- {%- else -%}
- <td></td>
- {%- endif -%}
-{%- endmacro -%}
-{% block head -%}
-<link rel="stylesheet" type="text/css" href="{{ url_for('static',
filename='nuclides.css') }}">
-{% endblock %}
-{% block title %}
-Wikidata chart of the nuclides - Wikimedia Tool Labs
-{% endblock %}
-{% block content %}
-<h1>Wikidata chart of the nuclides</h1>
-<h2> by decay mode (stable nuclides are black)</h2>
-{% if incomplete %}
- <h2>Incomplete</h2>
- <table>
- <thead>
- <tr>
- <th>nuclide</th>
- <th>atomic number</th>
- <th>neutron number</th>
- </tr>
- </thead>
- <tbody>
- {%- for nuclide in incomplete -%}
- <tr>
- <td><a href="{{ wd_url(nuclide) }}">{{
nuclide.label }} ({{ nuclide.item_id }})</a></td>
- <td>{{ nuclide.atomic_number or '?' }}</td>
- <td>{{ nuclide.neutron_number or '?' }}</td>
- </tr>
- {%- endfor -%}
- </tbody>
- </ul>
-{% endif %}
-<table id="nuclides">
- <tr><td>Proton number</td></tr>
- {%- for anum in sorted(table.keys(),reverse=True) -%}
- <tr>
- <td class="y_axis">
- {%- if anum % 5 == 0 -%}
- {{ anum }}
- {%- endif %}
- </td>
- {%- for nnum in sorted(table[anum].keys()) -%}
- {{ format_cell(table[anum][nnum]) }}
- {%- endfor -%}
- </tr>
- {%- endfor -%}
- <tr>
- <td> </td>
- {%- for nnum in sorted(table[0].keys()) -%}
- <td class="x_axis">
- {%- if nnum % 5 == 0 -%}
- {{ nnum }}
- {%- endif %}
- </td>
- {%- endfor -%}
- </tr>
- <tr><td colspan="100" align="center">Neutron number</td></tr>
-</table>
-
-<hr>
+{% extends "nuclides_common.html" %}
+{% block chart_label %}decay mode{% endblock %}
+{% block legend %}
<b>Decay types:</b>
<table>
<tr><td class="nuclide beta-minus" style="width: 20px; height:
20px;"></td><td> beta-minus decay</td></tr>
@@ -79,9 +11,9 @@
<tr><td class="nuclide alpha-decay" style="width: 20px; height:
20px;"></td><td> alpha decay</td></tr>
<tr><td class="nuclide spontaneous-fission" style="width: 5px; height:
5px;"></td><td> spontaneous fission</td></tr>
</table>
+{% endblock %}
-<hr>
-
+{% block links %}
<a href="{{ url_for('nuclides') }}">Nuclides by half-life</a> /
<a href="{{ url_for('index') }}">Periodic Table</a>
{% endblock %}
diff --git a/templates/nuclides.html b/templates/nuclides.html
index 73ba0fb..a67ec9c 100644
--- a/templates/nuclides.html
+++ b/templates/nuclides.html
@@ -1,77 +1,8 @@
-{% extends "base.html" %}
-{%- macro wd_url(nuclide) -%}
- //www.wikidata.org/wiki/{{ nuclide.item_id }}
-{%- endmacro -%}
-{%- macro format_cell(cell) -%}
- {%- if isinstance(cell, NoneCell) -%}
- <td class="empty"></td>
- {%- elif isinstance(cell, NuclideCell) -%}
- <td title="{{ cell.label }}" class="nuclide {% for class in
cell.classes %} {{ class }}{% endfor %}"> <a href="{{ wd_url(cell)
}}"> </a> </td>
- {%- else -%}
- <td></td>
- {%- endif -%}
-{%- endmacro -%}
-{% block head -%}
-<link rel="stylesheet" type="text/css" href="{{ url_for('static',
filename='nuclides.css') }}">
-{% endblock %}
-{% block title %}
-Wikidata chart of the nuclides - Wikimedia Tool Labs
-{% endblock %}
-{% block content %}
-<h1>Wikidata chart of the nuclides</h1>
-<h2> By half-life (stable nuclides are black)</h2>
-{% if incomplete %}
- <h2>Incomplete</h2>
- <table>
- <thead>
- <tr>
- <th>nuclide</th>
- <th>atomic number</th>
- <th>neutron number</th>
- </tr>
- </thead>
- <tbody>
- {%- for nuclide in incomplete -%}
- <tr>
- <td><a href="{{ wd_url(nuclide) }}">{{
nuclide.label }} ({{ nuclide.item_id }})</a></td>
- <td>{{ nuclide.atomic_number or '?' }}</td>
- <td>{{ nuclide.neutron_number or '?' }}</td>
- </tr>
- {%- endfor -%}
- </tbody>
- </ul>
-{% endif %}
-<table id="nuclides">
- <tr><td>Proton number</td></tr>
- {%- for anum in sorted(table.keys(),reverse=True) -%}
- <tr>
- <td class="y_axis">
- {%- if anum % 5 == 0 -%}
- {{ anum }}
- {%- endif %}
- </td>
- {%- for nnum in sorted(table[anum].keys()) -%}
- {{ format_cell(table[anum][nnum]) }}
- {%- endfor -%}
- </tr>
- {%- endfor -%}
- <tr>
- <td> </td>
- {%- for nnum in sorted(table[0].keys()) -%}
- <td class="x_axis">
- {%- if nnum % 5 == 0 -%}
- {{ nnum }}
- {%- endif %}
- </td>
- {%- endfor -%}
- </tr>
- <tr><td colspan="100" align="center">Neutron number</td></tr>
-</table>
-
-<hr>
+{% extends "nuclides_common.html" %}
+{% block chart_label %}half life{% endblock %}
+{% block legend %}
<b>Half-life ranges:</b>
<table>
-
<tr><td class="nuclide hl1e9" style="width: 20px; height: 20px;"></td><td>
> 10<sup>9</sup>s</td></tr>
<tr><td class="nuclide hl1e6" style="width: 20px; height: 20px;"></td><td>
10<sup>6</sup> - 10<sup>9</sup>s</td></tr>
<tr><td class="nuclide hl1e3" style="width: 20px; height: 20px;"></td><td>
10<sup>3</sup> - 10<sup>6</sup></td></tr>
@@ -88,8 +19,9 @@
<tr><td class="nuclide hl1e-18" style="width: 20px; height: 20px;"></td><td>
10<sup>-18</sup> - 10<sup>-15</sup> s</td></tr>
<tr><td class="nuclide hl1e-21" style="width: 20px; height: 20px;"></td><td>
< 10<sup>-18</sup> s</td></tr>
</table>
+{% endblock %}
-<hr>
+{% block links %}
<a href="{{ url_for('nuclide_decays') }}">Nuclides by dominant decay mode</a> /
<a href="{{ url_for('index') }}">Periodic Table</a>
{% endblock %}
diff --git a/templates/nuclides_common.html b/templates/nuclides_common.html
new file mode 100644
index 0000000..31fdf9a
--- /dev/null
+++ b/templates/nuclides_common.html
@@ -0,0 +1,71 @@
+{% extends "base.html" %}
+{%- macro wd_url(nuclide) -%}
+ //www.wikidata.org/wiki/{{ nuclide.item_id }}
+{%- endmacro -%}
+{%- macro format_cell(nuclide) -%}
+ {%- if isinstance(nuclide, NuclideCell) -%}
+ <a xlink:href="{{ wd_url(nuclide) }}"><rect x="{{
nuclide.neutron_number }}" y="-{{ nuclide.atomic_number }}" width="1"
height="1" class="nuclide {% for class in nuclide.classes %} {{ class }}{%
endfor %}"><title>{{ nuclide.label }}</title></rect></a>
+ {%- endif -%}
+{%- endmacro -%}
+{% block head -%}
+<link rel="stylesheet" type="text/css" href="{{ url_for('static',
filename='nuclides.css') }}">
+<script
src="http://ariutta.github.io/svg-pan-zoom/dist/svg-pan-zoom.min.js";></script>
+{% endblock %}
+{% block title %}
+Wikidata chart of the nuclides - Wikimedia Tool Labs
+{% endblock %}
+{% block content %}
+<h1>Wikidata chart of the nuclides</h1>
+<h2>By {% block chart_label %}{% endblock %} (stable nuclides are black)</h2>
+{% if incomplete %}
+ <h2>Incomplete</h2>
+ <table>
+ <thead>
+ <tr>
+ <th>nuclide</th>
+ <th>atomic number</th>
+ <th>neutron number</th>
+ </tr>
+ </thead>
+ <tbody>
+ {%- for nuclide in incomplete -%}
+ <tr>
+ <td><a href="{{ wd_url(nuclide) }}">{{
nuclide.label }} ({{ nuclide.item_id }})</a></td>
+ <td>{{ nuclide.atomic_number or '?' }}</td>
+ <td>{{ nuclide.neutron_number or '?' }}</td>
+ </tr>
+ {%- endfor -%}
+ </tbody>
+ </ul>
+{% endif %}
+<table>
+<tr><td>
+ <svg height="600px" width="700px" viewBox="-10 -{{ max_protons + 10 }} {{
max_neutrons + 20 }} {{ max_protons + 20 }}" preserveAspectRatio="xMinYMin
meet" id="nuclides">
+ {%- for magic_number in magic_numbers -%}
+ {%- if magic_number < max_neutrons -%}
+ <line x1="{{ magic_number + 0.5 }}" y1="-{{ max_protons }}"
x2="{{ magic_number + 0.5 }}" y2="0" style="stroke: #000000; stroke-width: 0.1;
stroke-dasharray: 0.5 0.2" />
+ <text font-size="2" transform="translate({{ magic_number }},
-{{ 2*magic_number**0.8 + 10 }})rotate(-90)">{{ magic_number }} neutrons</text>
+ {%- endif -%}
+ {%- if magic_number < max_protons -%}
+ <line x1="0" y1="-{{ magic_number - 0.5 }}" x2="{{
max_neutrons }}" y2="-{{ magic_number - 0.5 }}" style="stroke: #000000;
stroke-width: 0.1; stroke-dasharray: 0.5 0.2" />
+ <text x="{{ magic_number *1.5 + 25 }}" y="-{{ magic_number }}"
font-size="2">{{ magic_number }} protons</text>
+ {%- endif -%}
+ {%- endfor -%}
+ {%- for nuclide in nuclide_list -%}
+ {{ format_cell(nuclide) }}
+ {%- endfor -%}
+ </svg>
+</td><td>
+{% block legend %}{% endblock %}
+</td></tr></table>
+
+<hr>
+
+{% block links %}{% endblock %}
+
+<script>
+ window.onload = function() {
+ var zoomNuclides = svgPanZoom('#nuclides', {controlIconsEnabled: true,
fit: false});
+ };
+</script>
+{% endblock %}
--
To view, visit https://gerrit.wikimedia.org/r/275521
To unsubscribe, visit https://gerrit.wikimedia.org/r/settings
Gerrit-MessageType: newchange
Gerrit-Change-Id: I35f83888f486ed66c1b6ca264966992755147fc6
Gerrit-PatchSet: 1
Gerrit-Project: labs/tools/ptable
Gerrit-Branch: master
Gerrit-Owner: ArthurPSmith <[email protected]>
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