Hi Huazhong
I have the same error message as you as I install meep on ubuntu for the first time.
Reading Steven's solution in the earlier thread. I can now run meep without problem.
The key is to tell meep where to look for HDF5 lib during meep installation.
Please read my procedures below as an example:
1) My HDF5 lib was installed in "/home/yip0004/HDF5/hdf5-1.6.5/hdf5/lib"
2) under meep untarred directory, enter "./configure LDFLAGS=-L/home/yipc0004/HDF5/hdf5-1.6.5/hdf5/lib CPPFLAGS=-I/home/yipc0004/HDF5/hdf5-1.6.5/hdf5/include"
3) enter "make" (as root user)
4) enter "make install" (as root user)
hope this is useful.
regards
Chan Hoe
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