-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I noticed the same bug as Lingling Tang, regarding deadlock in output-hfield. However, I was using a parallel HDF5, so this was mysterious. On closer inspection, I realized that, during config, Meep was incorrectly determining that my installation of HDF5 was non-MPI. I configure meep as follows:
LD_LIBRARY_PATH="$HOME/install/lib" CC=mpicc MPICXX=mpiCC LDFLAGS="-L/home/bens/install/lib" CPPFLAGS="-I/home/bens/install/include" ./configure --prefix=$HOME/install --with-mpi - --with-libctl=$HOME/install/share/libctl ... checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... no ... I am as sure as I can be that my HDF5 is parallel. I compiled and installed it myself, and after config it confirms that "Parallel HDF5: Yes". The header file $HOME/install/include/H5FDmpio.h contains a prototype for H5Pset_fapl_mpio. Perhaps this problem is due to installing the library in a nonstandard place, prefix=$HOME/install. I am using HDF5 1.6.6, the latest version. If I can provide any other useful info, let me know. - --Ben -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.7 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFHBCZUUJT6e6HFtqQRAiPfAJ9hoNqKAUhmfnCGFVqwLO8NNG6WFACaAs2c gDGD/lvf8RlIfGoXBVG9RGQ= =L2gO -----END PGP SIGNATURE----- _______________________________________________ meep-discuss mailing list [email protected] http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
