I'm having trouble understanding the difference between normal flux commands
(add-flux) and the flux-in-box command.  As far as I can tell, they can both be
used to compute the flux through a plane or line.  From reading archived
questions, it seems that flux-in-box is usually used with a fixed frequency
source and add-flux flux planes are generally used with a Gaussian pulse.  Also,
flux-in-box can be used to get the flux at a single time step (which I didn't
really get from the reference section).

Mainly, I'm confused on when to apply these different commands.  I've been
trying to use normal add-flux commands to determine how a photonic crystal
structure enhances vertical emission versus that of a homogenous slab, but the
results don't seem to be what I intuitively expect, with regards to emission at
band gap frequencies or above the cut off frequency, etc.   
Thank you
Rob


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