I have been trying to install a parallel version of meep on an mpi cluster for a while now. Eventually I discovered that I was using the serial version of HDF5 and so I built a parallel version of HDF5 1.8.8 with the following configuration:
CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" CPPFLAGS="-I/share/apps/include $CPPFLAGS" ./configure --prefix=/share/apps --enable-parallel --enable-fortran As you can see, I built this package into the /share/apps directory. I was able to successfully build H5utils 1.12.1 against this with the following configuration: F77=mpif77 CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" CPPFLAGS="-I/share/apps/include $CPPFLAGS" ./configure --without-octave --prefix=/share/apps But then when I try to build Meep 1.1.1 against this HDF5 with the configuration: F77=mpif77 CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" CPPFLAGS="-I/share/apps/include -DH5_USE_16_API=1 $CPPFLAGS" ./configure --with-libctl=$RPM_BUILD_DIR/libctl-3.1 --with-mpi=/opt/openmpi/lib --prefix=/share/apps I see the following output from ./configure: checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... no checking hdf5.h presence... no checking for hdf5.h... no configure: WARNING: Couldn't find the HDF5 library!! Switching to --without-hdf5. I have checked the /share/apps/include directory, and it does indeed contain the hdf5.h header file -- with world-readable permissions. For the life of me I can't figure out why configure can't see the header file. Any thoughts? -- Jonathan Harker
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