This works for me: ./configure LDFLAGS=-L/opt/hdf5/lib CPPFLAGS=-I/opt/hdf5/include --prefix=/opt/meep-ompi --with-mpi --with-hdf5 Don't know if this is the problem, but you can try this kind of syntax. If you are able to run meep-mpi correctly without parallel hdf5 errors, report to the list please. I have tried do that without results for ages...
Regards Maicon Faria Reseacher Unicamp/FEEC/DMO Brazil Date: Thu, 1 Dec 2011 16:19:12 -0800 > From: K Jonathan Harker <[email protected]> > To: [email protected] > Subject: [Meep-discuss] Trouble building Meep 1.1.1 against parallel > HDF5 1.8.8 > Message-ID: > <cadbpaqnyzif_aevsaoascec8d9ldbexvfspcnzdxcusrpl3...@mail.gmail.com > > > Content-Type: text/plain; charset="iso-8859-1" > > I have been trying to install a parallel version of meep on an mpi cluster > for a while now. Eventually I discovered that I was using the serial > version of HDF5 and so I built a parallel version of HDF5 1.8.8 with the > following configuration: > > CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" > CPPFLAGS="-I/share/apps/include $CPPFLAGS" ./configure --prefix=/share/apps > --enable-parallel --enable-fortran > > As you can see, I built this package into the /share/apps directory. I was > able to successfully build H5utils 1.12.1 against this with the following > configuration: > > F77=mpif77 CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" > CPPFLAGS="-I/share/apps/include $CPPFLAGS" ./configure --without-octave > --prefix=/share/apps > > But then when I try to build Meep 1.1.1 against this HDF5 with the > configuration: > > F77=mpif77 CC=mpicc LDFLAGS="-L/share/apps/lib $LDFLAGS" > CPPFLAGS="-I/share/apps/include -DH5_USE_16_API=1 $CPPFLAGS" ./configure > --with-libctl=$RPM_BUILD_DIR/libctl-3.1 --with-mpi=/opt/openmpi/lib > --prefix=/share/apps > > I see the following output from ./configure: > > checking for H5Pcreate in -lhdf5... yes > checking hdf5.h usability... no > checking hdf5.h presence... no > checking for hdf5.h... no > configure: WARNING: Couldn't find the HDF5 library!! Switching to > --without-hdf5. > > I have checked the /share/apps/include directory, and it does indeed > contain the hdf5.h header file -- with world-readable permissions. For the > life of me I can't figure out why configure can't see the header file. Any > thoughts? > > -- > Jonathan Harker > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://ab-initio.mit.edu/pipermail/meep-discuss/attachments/20111201/6b72bc2d/attachment-0001.html > > > > >
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