Hi,
I built meep 1.2 on our computer, the compilation seems OK, and the program
rans, but there is no output files in the output directory:
In *.out file, there is a section:
Using MPI version 2.2, 24 processes
-----------
Initializing structure...
Working in 3D dimensions.
Computational cell is 460 x 460 x 544 with resolution 1
block, center = (0,0,-118)
size (100,100,100)
axes (1,0,0), (0,1,0), (0,0,1)
dielectric constant epsilon diagonal = (1,1,1)
block, center = (0,0,-222)
size (460,460,100)
axes (1,0,0), (0,1,0), (0,0,1)
dielectric constant epsilon diagonal = (1,1,1)
time for set_epsilon = 5.25407 s
drude susceptibility: frequency=1e-20, gamma=1.80376e-05
-----------
Meep: using output directory "a50b2c100-1211-out"
creating output file "a50b2c100-1211-out/xz_382-1.h5"...
creating output file "a50b2c100-1211-out/xz_382-2.h5"...
creating output file "a50b2c100-1211-out/xy_agcube_382-1.h5"...
creating output file "a50b2c100-1211-out/xy_agcube_382-2.h5"...
creating output file "a50b2c100-1211-out/xy_air_382-1.h5"...
creating output file "a50b2c100-1211-out/xy_air_382-2.h5"...
However, there is no these files:
chem@alps6:/work/chem/20121211> ls -Rl
.:
total 32
-rw-r--r-- 1 chem chem10 2511 2012-12-15 13:20 a50b2c100-1211.ctl
-rw-r--r-- 1 chem chem10 0 2012-12-15 18:37 a50b2c100-1211.err
-rwxr-xr-x 1 chem chem10 485 2012-12-15 18:37 a50b2c100-1211.meep
drwxr-xr-x 2 chem chem10 4096 2012-12-15 18:38 a50b2c100-1211-out
-rw-r--r-- 1 chem chem10 10398 2012-12-15 18:51 a50b2c100-1211.out
-rw-r--r-- 1 chem chem10 57 2012-12-15 18:37 a50b2c100-1211.stderr
-rw-r--r-- 1 chem chem10 216 2012-12-15 18:37 hosts.23247
./a50b2c100-1211-out:
total 0
I suspect something is wrong in my compilation, please help.
Here is the configure command I used:
export CXX=icpc
export F77=ifort
export CC=icc
export PATH=/pkg/chem/lib/intel/meep-util/libctl32/bin:$PATH
./configure -prefix=/pkg/chem/meep12.intel --with-mpi
--with-libctl=/pkg/chem/lib/intel/meep-util/libctl32/share/
libctl --with-blas=/pkg/chem/lib/intel/lapack12/librefblas.a
--with-lapack=/pkg/chem/lib/intel/lapack12/liblapack
.a --enable-static
Thank you.
Jyh-Shyong Ho, Ph.D.
Research Scientist
National Center for High Performance Computing
Hsinchu, Taiwan, ROC
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