Hi,
1) Do you use multiprocessing?  If so, which implementation, MPICH or OpenMPI?
2) Do you use HDF5 export? If so, which kind of HDF libraries,
MPI-enabled or "serial"? The latter is known to be very slow when used
in multiprocessing setup, though they should not alter subpixel
averaging.
3) Did the FDTD time-stepping speed drop, too, or is it just the
initialization? Did you observe performance drop with other
computational tools as well?

Filip


2016-09-01 9:48 GMT+02:00, Jisha C P <cpji...@gmail.com>:
> Dear MEEP users,
> My MEEP codes are running slower after I upgraded to Ubuntu 16.04 from
> 14.04. Earlier if a code took, for example, 1 minute to run, the same code
> now takes 10 minutes to run.
> Does anyone else have this problem?
> There are no errors, but the subpixel averaging is now taking much longer
> to finish than before.
> Any suggestion to fix this is appreciated.
> Thank you.
> Best regards,
> Jisha
>

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