John Sirois created MESOS-228:
---------------------------------
Summary: Memory leak in SchedulerDriver and/or Log by way of
libmesos-0.9.0.so
Key: MESOS-228
URL: https://issues.apache.org/jira/browse/MESOS-228
Project: Mesos
Issue Type: Bug
Reporter: John Sirois
We see both historical evidence for this in health-check kills of a java
process that uses the scheduler and log jni interfaces:
{code}
[UTC Jun 29 10:06:59] error : 'mesos-scheduler' total mem amount of
12584020kB matches resource limit [total mem amount>12582890kB]
[UTC Jun 29 10:06:59] info : 'mesos-scheduler' trying to restart
[UTC Jun 29 10:06:59] info : 'mesos-scheduler' stop:
/usr/local/bin/cond_pkill.sh
[UTC Jun 29 10:07:00] info : 'mesos-scheduler' start:
/usr/local/mesos/current/scripts/scheduler.sh
[UTC Jun 29 10:07:00] error : 'mesos-scheduler' failed, cannot open a
connection to INET[localhost:8081] via TCP
[UTC Jun 29 10:07:05] info : 'mesos-scheduler' 'mesos-scheduler' total mem
amount check succeeded [current total mem amount=230308kB]
{code}
This java process is configured -Xmx8g and here we have ~4g excess.
Live evidence shows the java process with ~6g rss:
{code}
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
32538 root 20 0 10.8g 6.0g 17m S 2.0 25.3 153:12.72 java
{code}
But gc logs at the time show :
{code}
418468.099: [Full GC 1127079K->287893K(8379776K), 0.6542120 secs]
418899.228: [GC 3072341K->293077K(8382464K), 0.0067430 secs]
419338.239: [GC 3076949K->298101K(8382464K), 0.0247080 secs]
419747.782: [GC 3081973K->302669K(8382528K), 0.0096910 secs]
{code}
So we see after full GC ~287MB heap for our 8g Xmx process.
And confirmation that the java process is linked to libmesos-0.9.0
{code}
[jsirois@smf1-ajb-35-sr4 ~]$ sudo /usr/sbin/lsof -p 32538 | grep mesos
java 32538 root mem REG 8,1 4128768 62816562
/var/lib/mesos/scheduler_db/mesos_log/036645.log
java 32538 root mem REG 8,1 4122293 62818480
/var/lib/mesos/scheduler_db/mesos_log/035763.sst
java 32538 root mem REG 8,1 595378 62817105
/var/lib/mesos/scheduler_db/mesos_log/035761.sst
java 32538 root mem REG 8,1 646331 62816570
/var/lib/mesos/scheduler_db/mesos_log/036647.sst
java 32538 root mem REG 8,1 43810914 22290579
/usr/local/lib/libmesos-0.9.0.so
java 32538 root mem REG 8,1 65536 62817148
/var/lib/mesos/scheduler_db/mesos_log/MANIFEST-035754
java 32538 root mem REG 8,1 180110 23004661
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.code.gson-gson-2.1.jar
java 32538 root mem REG 8,1 114128 23004663
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.easymock-easymock-3.0.jar
java 32538 root mem REG 8,1 538581 23004677
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.mortbay.jetty-jetty-6.1.25.jar
java 32538 root mem REG 8,1 555410 23004648
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-beans-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 265348 23004692
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.apache.mesos-mesos-0.9.0-120.jar
java 32538 root mem REG 8,1 391834 23004645
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/log4j-log4j-1.2.15.jar
java 32538 root mem REG 8,1 668861 23004675
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-context-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 45895 23004662
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-util-collection-4.0.3.jar
java 32538 root mem REG 8,1 34471 23004679
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.inject.extensions-guice-multibindings-3.0.jar
java 32538 root mem REG 8,1 575389 23004697
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-collections-commons-collections-3.2.1.jar
java 32538 root mem REG 8,1 2497 23004647
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/javax.inject-javax.inject-1.jar
java 32538 root mem REG 8,1 450279 23004668
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.protobuf-protobuf-java-2.4.1.jar
java 32538 root mem REG 8,1 36046 23004660
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.objenesis-objenesis-1.2.jar
java 32538 root mem REG 8,1 710492 23004669
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.inject-guice-3.0.jar
java 32538 root mem REG 8,1 388864 23004654
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/javax.mail-mail-1.4.jar
java 32538 root mem REG 8,1 959322 23004700
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/io.netty-netty-3.4.1.Final.jar
java 32538 root mem REG 8,1 60686 23004686
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-logging-commons-logging-1.1.1.jar
java 32538 root mem REG 8,1 534827 23004666
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/joda-time-joda-time-1.6.jar
java 32538 root mem REG 8,1 4467 23004699
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/aopalliance-aopalliance-1.0.jar
java 32538 root mem REG 8,1 105112 23004671
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/javax.servlet-servlet-api-2.5.jar
java 32538 root mem REG 8,1 148627 23004667
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.antlr-stringtemplate-3.2.1.jar
java 32538 root mem REG 8,1 134133 23004659
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.mortbay.jetty-servlet-api-2.5-20081211.jar
java 32538 root mem REG 8,1 177174 23004674
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.mortbay.jetty-jetty-util-6.1.25.jar
java 32538 root mem REG 8,1 1136402 23004665
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-finagle-core-4.0.5.jar
java 32538 root mem REG 8,1 36417 23004696
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-util-hashing-4.0.3.jar
java 32538 root mem REG 8,1 8717 23004702
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/net.sf.opencsv-opencsv-1.8.jar
java 32538 root mem REG 8,1 5648643 23004655
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.ibm.icu-icu4j-4.0.1.jar
java 32538 root mem REG 8,1 445288 23004704
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/antlr-antlr-2.7.7.jar
java 32538 root mem REG 8,1 261809 23004658
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-lang-commons-lang-2.4.jar
java 32538 root mem REG 8,1 278864 23004657
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.sonatype.sisu.inject-cglib-2.2.1-v20090111.jar
java 32538 root mem REG 8,1 1248544 23004690
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.h2database-h2-1.3.158.jar
java 32538 root mem REG 8,1 231922 23004653
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-tx-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 33015 23004682
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.code.findbugs-jsr305-1.3.9.jar
java 32538 root mem REG 8,1 6496110 23004691
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.scala-lang-scala-library-2.8.1.jar
java 32538 root mem REG 8,1 252570 23004687
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.visualization-visualization-datasource-1.0.2.jar
java 32538 root mem REG 8,1 1795936 23004684
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.guava-guava-12.0.jar
java 32538 root mem REG 8,1 604182 23004650
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.apache.zookeeper-zookeeper-3.3.4.jar
java 32538 root mem REG 8,1 163151 23004683
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-io-commons-io-2.1.jar
java 32538 root mem REG 8,1 184170 23004664
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-finagle-thrift-4.0.5.jar
java 32538 root mem REG 8,1 10602 23004673
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.testing-test-libraries-for-java-1.1.1.jar
java 32538 root mem REG 8,1 41229 23004680
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.hamcrest-hamcrest-core-1.2.jar
java 32538 root mem REG 8,1 232771 23004681
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-codec-commons-codec-1.6.jar
java 32538 root mem REG 8,1 666578 23004649
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-util-core-4.0.3.jar
java 32538 root mem REG 8,1 25496 23004678
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.slf4j-slf4j-api-1.6.1.jar
java 32538 root mem REG 8,1 202707 23004676
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/net.lag.jaramiko-jaramiko-151.jar
java 32538 root mem REG 8,1 321190 23004656
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-aop-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 385712 23004701
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-jdbc-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 169752 23004694
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-expression-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 610790 23004689
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/c3p0-c3p0-0.9.1.2.jar
java 32538 root mem REG 8,1 19659 23004670
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/silly-silly-thrift-0.5.0.jar
java 32538 root mem REG 8,1 2323932 22938866
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/mesos-scheduler.jar
java 32538 root mem REG 8,1 382442 23004652
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-core-3.0.5.RELEASE.jar
java 32538 root mem REG 8,1 36091 23004646
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/net.sf.cron4j-cron4j-2.2.3.jar
java 32538 root mem REG 8,1 65012 23004685
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.inject.extensions-guice-servlet-3.0.jar
java 32538 root mem REG 8,1 43033 23004651
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/asm-asm-3.1.jar
java 32538 root mem REG 8,1 234088 23004693
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/junit-junit-dep-4.10.jar
java 32538 root mem REG 8,1 322362 23004672
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/cglib-cglib-nodep-2.2.jar
java 32538 root mem REG 8,1 62983 23004703
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/javax.activation-activation-1.1.jar
java 32538 root mem REG 8,1 8890 23004698
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.slf4j-slf4j-jdk14-1.6.1.jar
java 32538 root mem REG 8,1 262243 23004695
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.apache.thrift-libthrift-0.5.0.jar
java 32538 root mem REG 8,1 53082 23004688
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-asm-3.0.5.RELEASE.jar
java 32538 root 3u REG 8,1 6 62817109
/var/run/mesos/mesos-scheduler.pid
java 32538 root 4w REG 8,1 104397594 62816934
/var/log/mesos/mesos-scheduler.log
java 32538 root 5w REG 8,1 104397594 62816934
/var/log/mesos/mesos-scheduler.log
java 32538 root 6w REG 8,1 15850 62816936
/var/log/mesos/mesos-scheduler-gc.log
java 32538 root 8r REG 8,1 2323932 22938866
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/mesos-scheduler.jar
java 32538 root 9r REG 8,1 2323932 22938866
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/mesos-scheduler.jar
java 32538 root 10r REG 8,1 262243 23004695
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.apache.thrift-libthrift-0.5.0.jar
java 32538 root 11r REG 8,1 8890 23004698
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.slf4j-slf4j-jdk14-1.6.1.jar
java 32538 root 12r REG 8,1 62983 23004703
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/javax.activation-activation-1.1.jar
java 32538 root 13r REG 8,1 322362 23004672
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/cglib-cglib-nodep-2.2.jar
java 32538 root 14r REG 8,1 234088 23004693
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/junit-junit-dep-4.10.jar
java 32538 root 15r REG 8,1 43033 23004651
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/asm-asm-3.1.jar
java 32538 root 16r REG 8,1 65012 23004685
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.inject.extensions-guice-servlet-3.0.jar
java 32538 root 17r REG 8,1 36091 23004646
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/net.sf.cron4j-cron4j-2.2.3.jar
java 32538 root 18r REG 8,1 382442 23004652
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-core-3.0.5.RELEASE.jar
java 32538 root 19r REG 8,1 53082 23004688
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-asm-3.0.5.RELEASE.jar
java 32538 root 20r REG 8,1 19659 23004670
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/silly-silly-thrift-0.5.0.jar
java 32538 root 21r REG 8,1 610790 23004689
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/c3p0-c3p0-0.9.1.2.jar
java 32538 root 22r REG 8,1 169752 23004694
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-expression-3.0.5.RELEASE.jar
java 32538 root 23r REG 8,1 385712 23004701
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-jdbc-3.0.5.RELEASE.jar
java 32538 root 24r REG 8,1 321190 23004656
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.springframework-spring-aop-3.0.5.RELEASE.jar
java 32538 root 25r REG 8,1 202707 23004676
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/net.lag.jaramiko-jaramiko-151.jar
java 32538 root 26r REG 8,1 25496 23004678
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.slf4j-slf4j-api-1.6.1.jar
java 32538 root 27r REG 8,1 666578 23004649
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-util-core-4.0.3.jar
java 32538 root 28r REG 8,1 1795936 23004684
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.guava-guava-12.0.jar
java 32538 root 29r REG 8,1 232771 23004681
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-codec-commons-codec-1.6.jar
java 32538 root 30r REG 8,1 41229 23004680
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.hamcrest-hamcrest-core-1.2.jar
java 32538 root 31r REG 8,1 10602 23004673
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.testing-test-libraries-for-java-1.1.1.jar
java 32538 root 32r REG 8,1 184170 23004664
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.twitter-finagle-thrift-4.0.5.jar
java 32538 root 33r REG 8,1 163151 23004683
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/commons-io-commons-io-2.1.jar
java 32538 root 34r REG 8,1 604182 23004650
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.apache.zookeeper-zookeeper-3.3.4.jar
java 32538 root 35r REG 8,1 252570 23004687
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.visualization-visualization-datasource-1.0.2.jar
java 32538 root 36r REG 8,1 6496110 23004691
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/org.scala-lang-scala-library-2.8.1.jar
java 32538 root 37r REG 8,1 33015 23004682
/usr/local/mesos/releases/20120625204857-b64ace493f7609ca461f0adb5e3d55a03633cebb/libs/com.google.code.findbugs-jsr305-1.3.9.jar
java 32538 root 38r REG 8,1 231922 23004653
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{code}
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