I am trying to purify a protein, starting with a fusion that is double-tagged 
with GST and poly-His, and my protein of interest also has an n-terminal 
poly-His tag of its own.  So the fusion protein is 
polyHis-GST-polyHis(Protein).  An initial step with glutathione Sepharose works 
just fine, the fusion protein binds and is eluted with 10 mM glutathione.  
Digestion of the fusion protein (with His-tagged TEV protease) also works, and 
gives me the polyHis-GST tag, plus polyHis(Protein).  BUT - when I re-run the 
digested protein over glutathione Sepharose, the polyHis-GST is not removed, 
and just passes through the column, along with the polyHis(Protein).  Has 
anyone else seen a problem with GST from a digested fusion protein not binding 
to glutathione Sepharose?  Could it be that the GST still has glutathione 
tightly bound to it?  (The fusion protein is digested by extensive dialysis 
with TEV protease).  Could it be that the polyHis-GST is not behaving the same 
as non-tagged GS!
 T?  This seems doubtful, since the fusion protein binds to glutathione 
Sepharose in the first step.  Before anyone suggests using a Nickel resin to 
remove the polyHis-GST, that's also a problem, since my protein of interest 
(and also the TEV protease) is His-tagged too.

Any suggestions/insights would be welcome!

Paul Phelan
Tufts University
Boston

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