Kudos for deciding to contribute back to Mezzanine :)
Here's a thread discussing the upgrade to a new version of Bootstrap: https://groups.google.com/forum/#!searchin/mezzanine-users/upgrade$20jquery/mezzanine-users/ReCgXP0v4rw/JY4GiTz4YqUJ.
TL;DR: the tricky part is actually upgrading the version of jQuery shipped with Mezzanine. You must do comprehensive visual and functional tests on the public and admin sites to see that nothing breaks.
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