> I have a small doubt how to run the batch jobs manually. 

Mifos does not have a facility for this.

Here is one developer hacks that you may find helpful in rolling your
own solution:
http://article.gmane.org/gmane.comp.finance.mifos.devel/5402

There was another hack by Paul Browne or Stephen Horgan or one of the
other fine folks from IBM that fired off all batch jobs on startup, but
I can't find it right now. It might have been posted on the
mifos-developer mailing list some time ago.

A somewhat related issue:
https://mifos.dev.java.net/issues/show_bug.cgi?id=1886

> Another thing I would like to know what other scripts are running on
> the server automatically. 

Which server?

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