IS there a recommended way to keep Microsoft Windows related code and libraries 
isolated from cygwin dependent code and libraries?

I am using "/bin/i686-w64-mingw32-gcc"  etc, which came from cygwin's setup 
program.

I created a development directory /msys     short for Microsoft system which 
will
hold MS Windows specific files, binaries, and libraries etc.   For example I 
will need to install a MS Windows  gtk+2.x.

Cygwind setup places mingw64 programs into cygwins  /usr/bin  which is mainly 
cygwin
specific programs.

My concern is in building a program that I'd get a result (since using cygwin 
environemetn) and getting a result that depends on the cygdll.   I assume that 
mingw does use posix file pathnames.

I need to to install a MS Windows perl interpreter.  Does anyone have 
recommendations here.  Preferable one which will accept posix pathnames and 
convert them to MS Windows based one if necessary.

Any advice about keeping the two systems: cygwin dll dependent and windeows 
dependend would be appreciated appreciated. 

thanks

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