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Hi,
I realised my information provided was poor. So this is my Makefile for
gmake:
8<-----------------------------------------------------------------
CC = gcc
CXX = g++
TARGET = mytracer
CFLAGS = -pipe -O2 -g -Wall -pg
DEFS = -DDEBUG
CLPD = /usr/local/crystallography/clipper
CCP4 = /usr/local/crystallography/ccp4-5.0.2
INCL = -I$(CLPD)/include -I$(CCP4)/include
LDFLAGS += -L$(CCP4)/lib -L$(CLPD)/lib -lclipper-ccp4 -lccp4c -lclipper-contrib
-lclipper-core
LDFLAGS += -lrfftw -lfftw
OBJS = atom.o \
analysis_structures.o \
base_cluster.o \
delegator.o \
ebody.o \
eshell.o \
logging.o \
main.o \
map_analysis.o \
map_fragment.o \
map_maker.o \
molekel.o \
parser.o \
pdb_atom.o \
pdb_molekel.o \
pdbin.o \
sequence.o \
sequence_tree.o \
simplex.o \
utils.o
all: $(OBJS)
$(CXX) $(CFLAGS) $(DEFS) $(INCL) $(OBJS) -o $(TARGET) $(LDFLAGS)
%.o: %.cpp %.h
$(CXX) $(CFLAGS) $(DEFS) $(INCL) -c $<
atom.o: types.h pse.h ideal_coordinates.h
crit_point.o: types.h
delegator.o: map_maker.h
ebody.o: eshape.h types.h
eshape.o: types.h utils.h
esphere.o: eshape.h types.h utils.h
eshell.o: types.h utils.h
main.o: main.cpp delegator.h parser.h
$(CXX) $(CFLAGS) $(DEFS) $(INCL) -c $<
map_fragment.o : molekel.h cc_trafo.h types.h utils.h
molekel.o: types.h atom.h ideal_coordinates.h
.PHONY: clean
clean:
rm -f *.o *~ $(TARGET)
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i.e., I compile and link with g++.
The programs that come with the ccp4-library I am using, work, so do the
examples that come with the clipper library, and those certainly also call
CCP4MTZfile
The examples from the library are compiled with the XCPPCLAGS=-g -fPIC
- -ftemplate-depth=30, but I don't think they are linker-related flags. With
OpenBSD do I need some other standard flags I forgot?
Tim
- --
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Fri, 22 Jul 2005, mcb, inc. wrote:
> On Fri, 22 Jul 2005, Tim Gruene wrote:
>
> > Good day,
> >
> > I am working on a program that relies on two libraries widely used in
> > crystallography, one ( the base library) written in C/fortran, the second,
> > which in turn is based on the first one, is written in C++.
> >
> > The program I wrote compiles, but when I start it, I get the message
> > "cannot find atexit, destructors will not be run!"
> > printed to the terminal,
> > and as soon as the program enters the part where the second library is
> > used, the program aborts with the last two words
> > CCP4MTZfile - internal error
> > Abort trap (core dumped)
>
> How did you link the program? Did you use a 'g++' command or
> a 'gcc' command? If a c++ program is not linked correctly, some
> necessary runtime code may go missing.
>
> --
> Monty Brandenberg, Software Consultant MCB, Inc.
> [EMAIL PROTECTED] P.O. Box 426188
> [EMAIL PROTECTED] Cambridge, MA 02142-0021
> 617.864.6907
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