Hi all, I am a new miso user and I run miso like this: Preparing the alternative isoforms annotation " index_gff --index ensGene.gff3 indexed/ " Computing expression estimates (“Psi” / Ψ values)
" miso --run indexed/ ~/mbd1rnaseq/3549WT.genome.sorted.bam --output-dir my_output1/ --paired-end 250 15 --read-len 101 --use-cluster --prefilter " It seems the running is fine, but I got a WARNING: "WARNING: Asked to wait on cluster jobs but cannot parse their job IDs from the cluster submission system." When I check the generated files under"my_sample_output", I could not find subdirectories by chromosomes: like" chr1/ chr2/ ... chrX/ " Instead, I got four folders under "my_sample_output": " batch-logs scripts_output batch-genes cluster_scripts " Anybody know how to solve this? Thanks in advance. Best, Yu
_______________________________________________ miso-users mailing list [email protected] http://mailman.mit.edu/mailman/listinfo/miso-users
