Hi Cara, Not specifying the miso_files or specifying any directory that does not contain MISO files (or a value like "None") should work. What error you get when you try one of these?
Best, Yarden On Jul 31, 2015, at 1:40 PM, Cara Lee Ann Ruble <[email protected]> wrote: > Hello, > > I am new at the command line sashimi_plot. The latest publication would > indicate that MISO output is now optional for input into sashimi_plot. I am > not clear on what the proper changes to the sashimi_plot_settings.txt would > be. Using the example provided in the > http://miso.readthedocs.org/en/fastmiso/sashimi.html, I am able to generate > the plot with using the MISO output provided. I have tried a number of ways > to not provide the MISO output and still generate the plot: I have tried > commenting out the miso_files line, leaving the [] list blank, and deleting > this whole section. All of these approaches lead to error messages without a > plot. > > Do you have any suggestions or examples of what the sashimi_plot_settings.txt > should be for just using the GFF and BAM? > > Thanks! > Cara > > Cara L. Ruble > Consultant Biologist, TTx Neuroscience > Eli Lilly and Company > Lilly Corporate Center > Indianapolis, IN 46285 U.S.A. > 317.651.5344 > [email protected] | www.lilly.com > <image001.jpg> > CONFIDENTIALITY NOTICE: This email message (including all attachments) is for > the sole use of the intended recipient(s) and may contain confidential > information. Any unauthorized review, use, disclosure, copying or > distribution is strictly prohibited. If you are not the intended recipient, > please contact the sender by reply email and destroy all copies of the > original message. > > _______________________________________________ > miso-users mailing list > [email protected] > http://mailman.mit.edu/mailman/listinfo/miso-users _______________________________________________ miso-users mailing list [email protected] http://mailman.mit.edu/mailman/listinfo/miso-users
