Hi, I just installed miso using 'pip install misopy' on Mac. But when I type miso I got the following error: ------------------------- $miso
MISO (Mixture of Isoforms model) Probabilistic analysis of RNA-Seq data for detecting differential isoforms Use --help argument to view options. Using MISO settings file: /usr/local/lib/python2.7/site-packages/misopy/settings/miso_settings.txt Error: Settings file /usr/local/lib/python2.7/site-packages/misopy/settings/miso_settings.txt does not exist. ------------------------------------- I also tried index_gff as below and finally Loaded 0 genes: $ index_gff --index ref_annotation1.gff indexed/ Indexing GFF... - GFF: /Users/shucheng/Documents/IGV/ref_annotation1.gff - Outputting to: /Users/shucheng/Documents/IGV/indexed WARNING: No entries found for gene US7 in GFF /Users/Dawn/Documents/IGV/ref_annotation1.gff Skipping gene US7... ------------------------ Is there any help? Thanks! Dawn
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