Thank you! ________________________________________ From: Yarden Katz [[email protected]] On Behalf Of Yarden Katz [[email protected]] Sent: Tuesday, June 28, 2016 9:54 AM To: Wang, Ziheng Cc: [email protected] Subject: Re: [miso-users] Psi values for genes with only two isoforms?
The mRNA field lists the order of isoforms that MISO uses. So the Psi value in this case is of the first isoform listed in the mRNA field. Yarden > On Jun 28, 2016, at 9:27 AM, Wang, Ziheng <[email protected]> wrote: > > Dear MISO users: > > I have noticed an interesting problem. For genes with only two isoforms, > there is only one psi value printed. From my data it looks like that this > value is the psi of the first isoform. Is that indeed the case? > > An example is shown below: > > gene:ENSG00000102145 0.60 0.13 0.89 > 'transcript:ENST00000376670@48786554@48786645@+_transcript:ENST00000376670@48791091@48791329@+_transcript:ENST00000376670@48791844@48792221@+_transcript:ENST00000376670@48792323@48792468@+_transcript:ENST00000376670@48793172@48793297@+_transcript:ENST00000376670@48793793@48794308@+','transcript:ENST00000376665@48786573@48786645@+_transcript:ENST00000376665@48791091@48791329@+_transcript:ENST00000376665@48791844@48792221@+_transcript:ENST00000376665@48792323@48792468@+_transcript:ENST00000376665@48793172@48793297@+_transcript:ENST00000376665@48794134@48794311@+' > (0,0):11,(1,0):2,(1,1):7 0:5,1:4 X + 48786554,48786573 > 48794308,48794311 > > Thanks to anybody who can help! > > Sincerely, > > Ziheng Wang > _______________________________________________ > miso-users mailing list > [email protected] > http://mailman.mit.edu/mailman/listinfo/miso-users _______________________________________________ miso-users mailing list [email protected] http://mailman.mit.edu/mailman/listinfo/miso-users
