The Problem is done. With actual version of mitk (mitk svn 24878, vtk 5.6.0, itk 3.16.0) it works fine. It was also important to use itk 3.16.0 instead of 3.18.0.
Where can I get more informations about the Diffusion-Plugin (workflow, dissertations, discussion, capabilities, limits ... also in german possible) I found: http://docs.mitk.org/nightly-qt4/org.diffusion.html http://www.mitk.org/wiki/Publications http://dx.doi.org/10.1016/j.neuroimage.2010.02.007 http://www.cs.ucl.ac.uk/miccai/dmfc/procs2.pdf Best regards Frank > Tue, 13 Jul 2010 12:20:11 +0200 - Fritzsche Klaus > <[email protected]>: > AW: AW: [mitk-users] MITK ExtApp Diffusion-Plugin > Hi Frank, > > I parsed one of my diffusion-files and it looks like this: > > Private_0029_1008: 'IMAGE NUM 4' > Private_0029_1009: '20090122' > Private_0029_1010: [10023x1 uint8] > Private_0029_1018: 'MR' > Private_0029_1019: '20090122' > Private_0029_1020: [80111x1 uint8] > Private_0029_1160: 'com' > > and "0029_1010" contains the following keywords: > > EchoLinePosition, EchoColumnPosition, EchoPartitionPosition, > UsedChannelMask, Actual3DImaPartNumber, ICE_Dims, B_value, Filter1, > Filter2, ProtocolSliceNumber, RealDwellTime, PixelFile, > PixelFileName, SliceMeasurementDuration, SequenceMask, > AcquisitionMatrixText, MeasuredFourierLines, FlowEncodingDirection, > FlowVenc, PhaseEncodingDirectionPositive, NumberOfImagesInMosaic, > DiffusionGradientDirection, ImageGroup, SliceNormalVector, > DiffusionDirectionality, TimeAfterStart, FlipAngle, SequenceName, > RepetitionTime, EchoTime, NumberOfAverages, VoxelThickness, > VoxelPhaseFOV, VoxelReadoutFOV, VoxelPositionSag, VoxelPositionCor, > VoxelPositionTra, VoxelNormalSag, VoxelNormalCor, VoxelNormalTra, > VoxelInPlaneRot, ImagePositionPatient, ImageOrientationPatient, > PixelSpacing, SliceLocation, SliceThickness, > SpectrumTextRegionLabel, Comp_Algorithm, Comp_Blended, > Comp_ManualAdjusted, Comp_AutoParam, Comp_AdjustedParam, Comp_JobID, > FMRIStimulInfo, FlowEncodingDirectionString, > RepetitionTimeEffective, CsiImagePositionPatient, > CsiImageOrientationPatient, CsiPixelSpacing, CsiSliceLocation, > CsiSliceThickness, OriginalSeriesNumber, OriginalImageNumber, > ImaAbsTablePosition, NonPlanarImage, MoCoQMeasure, LQAlgorithm, > SlicePosition_PCS, RBMoCoTrans, RBMoCoRot, MultistepIndex, > ImaRelTablePosition, ImaCoilString, RFSWDDataType, GSWDDataType, > NormalizeManipulated, ImaPATModeText, B_matrix, > BandwidthPerPixelPhaseEncode, FMRIStimulLevel, MosaicRefAcqTimes, > AutoInlineImageFilterEnabled > > Only "DiffusionGradientDirection" and "B_value" are used. > > Could you identify other TAGS in your dataset that exhibit the > b-value and gradient information? Do you know of different > conventions between different SIEMENS scanners? > > Best regards > Klaus Fritzsche > > > ________________________________________ > Von: Frank Blaschke [[email protected]] > Gesendet: Dienstag, 13. Juli 2010 11:14 > An: Fritzsche Klaus > Cc: [email protected] > Betreff: Re: AW: [mitk-users] MITK ExtApp Diffusion-Plugin > > Hi, > > we use the standart SIEMENS DWI product sequence. We've looked in our > DICOM tags: > > 0029,0010 ---: SIEMENS CSA HEADER > 0029,0011 ---: SIEMENS MEDCOM HEADER > 0029,0012 ---: SIEMENS MEDCOM HEADER2 > 0029,1008 ---: IMAGE NUM 4 > 0029,1009 ---: 20100209 > 0029,1018 ---: MR > 0029,1019 ---: 20100209 > 0029,1131 ---: 4.0.386076244 > 0029,1134 ---: DB TO DICOM > 0029,1260 ---: com > > What has to stand in there? > > best regards > > Frank > > >> the DICOM import has been tested on SIEMENS-datasets, but it looks >> like it is not able to find the correct meta-information in your >> datasets. >> >> The code in >> >> >> Modules/DiffusionImaging/DicomImport/mitkSiemensDicomDiffusionImageHeaderReader.cpp >> >> checks the private DICOM-tag "0029,1010", do you have a chance to >> take a look at the tag in your datasets? > > > > > > > >> >> Hi, >> >> i wanna use the mitk.gui.qt.diffusionimagin plugin. It include DICOM >> Import extension. When I try to use it, i get the following console >> output: >> >> s...@judika:~$ /usr/lib/mitk/bin/ExtApp >> [Mon Jul 12 14:02:09 2010 >> 0.110] Registering CoreExtObjectFactory... >> [0.110] CoreObjectFactory c'tor >> [0.110] CoreExtObjectFactory c'tor >> [0.110] CoreObjectFactory: registering extra factory of type >> CoreExtObjectFactory >> [0.260] Registering DiffusionImagingObjectFactory... >> [0.260] DiffusionImagingObjectFactory c'tor >> [0.260] CoreObjectFactory: registering extra factory of type >> DiffusionImagingObjectFactory >> [0.260] CoreObjectFactory: registering extra factory of type >> DiffusionImagingObjectFactory >> [0.270] Registering PlanarFigureObjectFactory... >> [0.270] PlanarFigureObjectFactory c'tor >> [0.270] CoreObjectFactory: registering extra factory of type >> PlanarFigureObjectFactory >> [0.330] QmitkRegisterClasses() >> [0.340] QmitkExtRegisterClasses() >> [0.950] [BlueBerry] BlueBerry Workbench ready >> >> Image #1/1 Dims 512x512x3 Warning: No B_value in >> /home/salz/workspace/MRT-Datensaetze/Data01/MR.1.3.12.2.1107.5.2.13.20566.30000010020907204484300004401 >> Probe Tag Starts Stops Time (s) >> Directory Parsing 1 1 0.018 >> Header Reading 1 1 0.119 >> Volume Loading 1 0 0.000 >> Aborted >> s...@judika:~$ >> >> Every other files i tried to use ExtApp crashes. Are there special >> requirements for DICOM files to use them with Diffusion-Plugin? The >> normal way to import them in ExtApp works. >> >> I use Ubuntu 9.10 >> gcc-4.4.1 >> CMake-2.8.0 >> VTK-5.6.0 >> ITK-3.18.0 >> Qt-4.5.3 >> MITK-svn-2010-07-12 (#24511) >> boost-1.43.0 >> >> Greetings >> >> Frank >> > -- Frank Blaschke Department for Biometry and Medical Informatics web: http://www.med.uni-magdeburg.de/ibmi.html phone: +49 391 67 135 51 office: building 2 / room 212 ------------------------------------------------------------------------------ The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. 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