Hello again. I did not receive any responses to my last email I decided
to try something else.
Since the Diffusion Image reader in the MITK modules folder does
something similar to which I want to achieve, I decided to build a
module that includes my readers and registers them. For that I added a
new folder called modules to my project. Since all include path's should
be the same for modules as they are for the bundle folder, I added the
module folder to the projects cmakelist.txt with the cmake
ADD_SUBDIRECTORY(Modules) command.
Furthermore I created a plugin with the activator template to activate
my new module on MITK start. But as I was trying to compile my solution,
all of my module files can't seem to find the includes of MITK and I
don't know why. I thought that the ADD_SUBDIRECTORY(Modules) command
should suffice to inherit the MITK include path information for the
modules folder. I tried to find some line where the bundle folder
utilizes an additional command to receive the include path's but I can't
seem to find one. Can anyone tell me how I pass down the path
information for MITK to my new modules folder so that I can test whether
my build is finally working.
/// my module cmakelists.txt
FIND_PACKAGE(ITK)
MITK_CREATE_MODULE( FileReaderCollection
INCLUDE_DIRS volImageIO UAFImageIO JHFImageIO
${CMAKE_CURRENT_BINARY_DIR}
#DEPENDS MitkExt
PACKAGE_DEPENDS ITK
)
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/FileReaderConfigure.h.in
${CMAKE_CURRENT_BINARY_DIR}/FileReaderConfigure.h.in)
This is as similar to the DiffusionImaging cmakelists.txt as it can be.
Thank you in advance for any responses.
On 11/26/2010 13:07, Matthias Noll wrote:
> Hi all,
>
> since I am porting my old mitk 0.12 functionalities to 0.14 I need to
> figure out a way how to add my file reader classes. (itk based, not
> mitkIOAdapter based)
>
> In the old verion it just worked like this:
>
> Register the factory of my own reader to the ObjectFactoryBase class and
> it would be ready to read. I did this in the constructor of my
> functionality.
>
> itk::ObjectFactoryBase::RegisterFactory( itk::MyImageIOFactory::New() );
>
> If I do the same in the new version of mitk it still seems to register
> but nothing happens if I load any of my files. Afer some time of
> debugging I still can't seem to find a solution for this problem.
>
> While loading a file the function ObjectFactoryBase::CreateAllInstance()
> accesses the member ObjectFactoryBase::m_RegisteredFactories where all
> itk file readers are present e.g. itkPNGImageIO except my newly registered.
>
> In addition the dicom file checking in
> mitkDataNodeFactory::GenerateData() was changed from text based file
> extension checking to this->ReadFileSeriesTypeDCM(); which effectively
> is tag based. Since some of the readers I use also have dicom like tags,
> they are not going to work since those files will always be treated as
> dicom files making things even more problematic.
>
> Maybe somebody on the mailinglist can point me in the right direction
> how to add/register itk based file readers to mitk.
>
> Best regards,
> Matthias
>
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--
Dipl.-Inform. Matthias Noll
Research Assistant 'Cognitive Computing & Medical Imaging'
Fraunhofer-Institut für Graphische Datenverarbeitung IGD
Fraunhoferstr. 5 | 64283 Darmstadt | Germany
Tel +49 6151 155-485 | Fax +49 6151 155-480
[email protected] | www.igd.fraunhofer.de
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