Dear Christina,
the head-motion and eddy-current correction is provided by the DWI Registration
plugin in the latest MITK Diffusion release: Version 2013.09.04
For the import of data in fsl format, the data has to be named as follows :
data.fslgz
data.fslgz.bvecs
data.fslgz.bvals
In this way loading the data.fslgz into MITK will result into a DW image which
can then be used for the processing, i.e. starting with the correction. If you
have the b0 and b1000 data separately, the fslmerge is a perfect tool for the
merge.
Best,
Jan
From: Christina Rossmanith [mailto:[email protected]]
Sent: Donnerstag, 14. November 2013 15:20
To: [email protected]
Subject: [mitk-users] MITK-DI -> import of FSL preprocessed DTI data
Hi,
I'd like to use the fsl import. Which preprocessing is expected to be done with
fsl and what will be done within MITK-DI? Just fslmerge all b0 and b1000
volumes into a single data.fslgz? What about eddy current correction? Should
bvecs and bvals be renamed to data.{bvecs|bvals}.fsl (because they are plain
ASCII files)?
Any hint is welcome,
Christina Roßmanith
--
Dept. of Neurology
University Hospital Mannheim
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