hey,
I want to trial run a 2D-2D image registration program that i have been
working on mitk I have compiled and got the executables from the source
files in the mitk for step1-9 and have checked to see that they work
perfectly and exactly how I hope to see results from my image registration
program.What exactly I am trying to do right now is that, I have modified
the STEP 6 code from tutorials to run the generate2() in
mitkBSplineRegistration.cpp in place of regiongrowing() and having troubles
with the including Qmitk directories in CMakeLists.txt which I believe
keeps giving me errors like QmitkRenderWindow.h: no such file or directory
and QmitkRegisterClasses.h: No such file or directory . Can anybody please
suggest the changes I need to make to CMakeLists.txt or files.cmake so I
can get the trial program running. After this I need to trying registering
3 D dicom datasets and I still am grappling with issues that are not
algorithm based where I shoulde be primarily focussing. Any suggestions
please..
Jatin
On Thu, Feb 27, 2014 at 8:58 AM, Daniel Maleike
<[email protected]>wrote:
> On 26.02.2014 18:45, Jatin Nath wrote:
> > Hi all,
> >
> > I am trying write a program for registration of two 3D datasets of DICOM
> > images. essentially i need to read the reference datasets using
> > mitkDicomSeriesReader and and using the m_ReferenceImage (which i hope i
> > can get the 2D image for each image from the 3d dataset via iteration)
> > and use itk GDCM to get the filenames for the 2nd dataset in order to
> > pass each 2d itk image to the mitkbsplineregsitration function .
> > mitkDicomSeriesReader.h has the function LoadDicomSeries and from the
> > documentation I havent been completely able to decipher how to access
> > each 2d image (which according to me shoulde be accessible later in the
> > mitkbsplineregistration as m_ReferencedImage). Can anyone suggest a way
> > to use the mitkDicomSeriesReader::LoadDicomseries if possible with a
> > code bit. I have gone through the "usage " in the documentation, but
> > still find it a bit unsettling. Sorry if my question is a little
> > unclear, or too basic. I would appreciate any suggestions.
>
> Dear Jatin,
>
> from how I understand your question, you need 2D images for your
> registration, both on the reference and the moving image side.
>
> 1. From the "FileNamesGrouping" structure that you get from GetSeries(),
> you can access the filenames that will be loaded via GetFilenames(). You
> could load these individually (ITK or MITK) and have true 2D images.
>
> 2. If you also need the 3D image that DicomSeriesReader would create,
> you could extract slices via mitk::ExtractSliceFilter or
> mitk::ImageSliceSelector. Especially for the latter one I suggest to
> look for example usage in the MITK code.
>
> Hope this helps a bit.
>
> Regards,
> Daniel
>
> --
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--
Jatin Nath,
School of BioMedical Engineering,
Indian Institute of Technology (Banaras Hindu University), Varanasi
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