Hi Nik, the difference between the two reinit functions is:
Global reinit: 1. The orientation of the worldgeometry, which basically defines the rendering space, is set to the standard coordinate system 2. The size of the worldgeometry is calculated, so that it includes all loaded data (depends on size and position of you loaded data) 3. The spacing is set to the smallest existing spacing regarding you loaded data Reinit: 1. The orientation of the worldgeometry, is aligned according to the orientation of the currently selected datanode 2. The size of the worldgeometry is set to the size of the currently selected datanode 3. The spacing is set to the spacing of the currently selected datanode The segmentation plugin requires the woldgeometry to be aligned to the selected image. In most of the cases, if you just loaded one image, this is not necessary but e.g. if you have loaded two different images with different size and origin, the manual segmentation would not work, since the world geometry would not be aligned with the image, that you want to segment. Best, Andreas Von: <Goch>, Caspar Goch <c.g...@dkfz-heidelberg.de<mailto:c.g...@dkfz-heidelberg.de>> Datum: Wednesday 17 June 2015 16:33 An: "'Block, Nikolas'" <nikolas.bl...@ucsf.edu<mailto:nikolas.bl...@ucsf.edu>>, "mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>" <mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>> Betreff: Re: [mitk-users] Question: reinit - image flip Hi Nik, as far as I can tell this seems to be the same issue as described in bugs 11477 and 16772 [1,2]. I believe there is currently no fix for it (apart from changing your image matrix, which is not always an option). Someone in our group is currently starting to work on it and possible solutions will be discussed in next week’s meeting, so those bugs should be updated soonish. Any comments are welcome. Best, Caspar [1] http://bugs.mitk.org/show_bug.cgi?id=11477 [2] http://bugs.mitk.org/show_bug.cgi?id=16772 Von: Block, Nikolas [mailto:nikolas.bl...@ucsf.edu] Gesendet: Mittwoch, 17. Juni 2015 00:11 An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net> Betreff: [mitk-users] Question: reinit - image flip Dear MITK folks, I’m having a bit of trouble with the global reinit vs reinit functions. It seems when I click global reinit, the image is oriented correctly. However, when I click reinit, which I need to do to perform a segmentation, the image flips (Right becomes Left), reorganizes the axial, coronal, and sagittal views, and it rotates some of these views. Is there a way to prevent this from happening while maintaining the ability to continue segmenting? Many thanks, Nik --- Nikolas R. Block UC Berkeley - UCSF Joint Medical Program MD 2019 | MS 2017 nrbl...@gmail.com<mailto:nrbl...@gmail.com> | nrbl...@berkeley.edu<mailto:nrb...@berkeley.edu> | nikolas.bl...@ucsf.edu<mailto:nbl...@memory.ucsf.edu> Linkedin<http://www.linkedin.com/in/nikblock> ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
