Hi Samuel,

I doubt CMake is at fault…

Generally the simulation takes a lot of RAM (I think the original simulation 
was done with 32 GB). However, there is a lot of copying going on in the 
background and I cannot guarantee that there is no leakage. You might want to 
try doing the simulation without the head motion. That should reduce the RAM 
requirements.

Best,
Caspar

Von: Samuel St-Jean [mailto:samuel.st-j...@usherbrooke.ca]
Gesendet: Montag, 28. September 2015 17:45
An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Betreff: [mitk-users] Regenerating ISMRM 2015 challenge data with fiberfox




Hello everyone,



I downloaded the archive for re-generating the data from the challenge website 
and am using the latest mitk master branch. Everything built fine on my ubuntu 
15.04 machine in release mode and I can run MITK itself without any problem nor 
errors.



Although, I tried both the command line version of Fiberfox and the graphical 
view for generating the phantom, but I run out of ram at around 20% of the 
¨Generating 4-compartment diffusion-weighted signal¨ process. My computer 
starts swapping out like crazy with htop showing a usage of 18.5 go of ram as I 
only have 16go of ram.



Is the generation process this ram intensive of might there be something 
wrongly configured by cmake during the build process?



Samuel

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