Hi Amir, according to your screenshots, the issue you describe is solved in the current master. See also bug http://bugs.mitk.org/show_bug.cgi?id=11477 MITK did not handle left handed geometries very well.
You can verify that, by building the MITK master by yourself (as you already did). You can activate a plugin using CMake. Simply set the binary directory in CMake to the MITK-build directory. You will then see all the plugins (the entries look like "org.mitk.gui.qt.<plugin_name>"). Activate the segmentation plugin (org.mitk.gui.qt.segmentation) Configure and generate with CMake Start the build again Start Workbench => you should see the segmentation plugin Please note, that we have some known issues in the segmentation [1] in the current master branch which is due the the migration to the multilabel image data structure. These issues will be fixed in the upcoming release which will be around the end of march. Regards, Andreas [1] http://bugs.mitk.org/buglist.cgi?component=Segmentation&list_id=87075&product=MITK&query_format=advanced&resolution=---&order=bug_id%20DESC&query_based_on= Von: Amir Zolal <amirzo...@gmail.com<mailto:amirzo...@gmail.com>> Datum: Sunday 21 February 2016 10:02 An: "mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>" <mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>> Betreff: [mitk-users] Segmentation Hello, I wanted to use the segmentation feature in MITK 2015. Currently I am using the 3M3 version of the software, but this is (I think) no longer available, and also without the latest interpolation options. The problem I have is that each segmentation image I create seems to be spatially displaced with regard to the original, i.e. the Slices are shown empty and the 3d viewer shows their position outside of the original image. This problem is corrected after reinit on the normal image, but comes back on reinit of the segmentation image, which is necessary before drawing the segmentation. Please see the attached images, is there something I am doing wrong? The same thing happens with the same file in 2014 Diffusion. And - this is the latest binary I downloaded. I have problems building the application, it compiles, but by default, it doesn't contain any of the plugins (and also no segmentation). If somebody tells me how to enable the compilation of the plugins, I will be happy to test with my own build. Thanks, Amir Zolal ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
