Hi,
I am a new user of MITK and recently built it using the SUPERBUILD option.
MITK was built successfully in parallel but fails to start and aborts
giving the following message:
*$ ./MitkWorkbench*
*Aborted (core dumped)*
I am using Ubuntu 14.04, cmake version 3.2.2 and gcc version 4.8.4. I have
also attached CMakeCache.txt for reference.
--
Thanks,
Vijay
# This is the CMakeCache file.
# For build in directory: /home/vvedula/Software/Image/MITK/superbuild
# It was generated by CMake: /usr/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.
########################
# EXTERNAL cache entries
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//path to the bison executable
BISON_EXECUTABLE:FILEPATH=/usr/bin/bison
//Flags used by bison
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BUILD_SHARED_LIBS:BOOL=ON
//Test the project
BUILD_TESTING:BOOL=ON
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CMAKE_AR:FILEPATH=/usr/bin/ar
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//Flags used by the compiler during release builds with debug info.
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
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CMAKE_C_COMPILER:FILEPATH=/usr/bin/cc
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CMAKE_C_FLAGS_DEBUG:STRING=-g
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CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
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CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
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//Path to CTK build directory
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//Path to DCMTK build directory
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//Path to Eigen build directory
EXTERNAL_Eigen_DIR:PATH=
//Path to GDCM build directory
EXTERNAL_GDCM_DIR:PATH=
//Path to GLEW build directory
EXTERNAL_GLEW_DIR:PATH=
//Path to ITK build directory
EXTERNAL_ITK_DIR:PATH=
//Path to the MITK data directory
EXTERNAL_MITK_DATA_DIR:PATH=
//Path to Numpy build directory
EXTERNAL_Numpy_DIR:PATH=
//Path to PCRE build directory
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//Path to Qwt build directory
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//Path to SWIG build directory
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//Path to ZLIB build directory
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//Path to tinyxml build directory
EXTERNAL_tinyxml_DIR:PATH=
//Test HAS_FLAG_-std=c11
HAS_FLAG_-std:UNINITIALIZED=c11:INTERNAL=1
//Value Computed by CMake
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//Value Computed by CMake
MITK-superbuild_SOURCE_DIR:STATIC=/home/vvedula/Software/Image/MITK/source
//List of composite pixel types used in AccessByItk and
InstantiateAccessFunction
// macros
MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES:STRING=itk::RGBPixel<unsigned char>,
itk::RGBAPixel<unsigned char>
//List of dimensions used in AccessByItk and InstantiateAccessFunction
// macros
MITK_ACCESSBYITK_DIMENSIONS:STRING=2,3
//List of floating pixel types used in AccessByItk and InstantiateAccessFunction
// macros
MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES:STRING=double, float
//List of integral pixel types used in AccessByItk and InstantiateAccessFunction
// macros
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short, char, unsigned char
//List of vector pixel types used in AccessByItk and InstantiateAccessFunction
// macros for itk::VectorImage types
MITK_ACCESSBYITK_VECTOR_PIXEL_TYPES:STRING=itk::VariableLengthVector<int>,itk::VariableLengthVector<
unsigned int>,itk::VariableLengthVector< short>,itk::VariableLengthVector<
unsigned short>,itk::VariableLengthVector< char>,itk::VariableLengthVector<
unsigned char>,itk::VariableLengthVector<double>,itk::VariableLengthVector<
float>
//Additional CXX Flags for MITK
MITK_ADDITIONAL_CXX_FLAGS:STRING=
//Additional Debug CXX Flags for MITK
MITK_ADDITIONAL_CXX_FLAGS_DEBUG:STRING=
//Additional Release CXX Flags for MITK
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//Additional C Flags for MITK
MITK_ADDITIONAL_C_FLAGS:STRING=
//Additional Debug C Flags for MITK
MITK_ADDITIONAL_C_FLAGS_DEBUG:STRING=
//Additional Release C Flags for MITK
MITK_ADDITIONAL_C_FLAGS_RELEASE:STRING=
//Additional exe linker flags for MITK
MITK_ADDITIONAL_EXE_LINKER_FLAGS:STRING=
//Additional module linker flags for MITK
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//Additional shared linker flags for MITK
MITK_ADDITIONAL_SHARED_LINKER_FLAGS:STRING=
//Build all MITK applications
MITK_BUILD_ALL_APPS:BOOL=OFF
//Build all MITK plugins
MITK_BUILD_ALL_PLUGINS:BOOL=OFF
//Use pre-defined MITK configurations
MITK_BUILD_CONFIGURATION:STRING=Custom
//Build the MITK Examples
MITK_BUILD_EXAMPLES:BOOL=OFF
//Enable support for reading the DKFZ pic file format.
MITK_ENABLE_PIC_READER:BOOL=ON
//Use Approximated Centroidal Voronoi Diagrams
MITK_USE_ACVD:BOOL=OFF
//Use Approximate Nearest Neighbor Library
MITK_USE_ANN:BOOL=ON
//Build the BlueBerry platform
MITK_USE_BLUEBERRY:BOOL=ON
//A semi-colon separated list of required Boost libraries
MITK_USE_Boost_LIBRARIES:STRING=
//Use CTK in MITK
MITK_USE_CTK:BOOL=ON
//Use CppUnit for unit tests
MITK_USE_CppUnit:BOOL=ON
//EXPERIMENTAL, superbuild only: Use DCMTK in MITK
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//Use the Redland RDF library
MITK_USE_Redland:BOOL=OFF
//Use Simulation Open Framework Architecture
MITK_USE_SOFA:BOOL=OFF
//Build MITK and the projects it depends on via SuperBuild.cmake.
MITK_USE_SUPERBUILD:BOOL=ON
//Use SWIG
MITK_USE_SWIG:BOOL=ON
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MITK_WHITELISTS_EXTERNAL_PATH:PATH=/home/vvedula/.mitk/Whitelists
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//The directory containing a CMake configuration file for Qt5Network.
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//ADVANCED property for variable: EXTERNAL_CTK_DIR
EXTERNAL_CTK_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_CppUnit_DIR
EXTERNAL_CppUnit_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_DCMTK_DIR
EXTERNAL_DCMTK_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_Eigen_DIR
EXTERNAL_Eigen_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_GDCM_DIR
EXTERNAL_GDCM_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_GLEW_DIR
EXTERNAL_GLEW_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_ITK_DIR
EXTERNAL_ITK_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_MITK_DATA_DIR
EXTERNAL_MITK_DATA_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_Numpy_DIR
EXTERNAL_Numpy_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_PCRE_DIR
EXTERNAL_PCRE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_Poco_DIR
EXTERNAL_Poco_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_Qwt_DIR
EXTERNAL_Qwt_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_SWIG_DIR
EXTERNAL_SWIG_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_SimpleITK_DIR
EXTERNAL_SimpleITK_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_VTK_DIR
EXTERNAL_VTK_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_ZLIB_DIR
EXTERNAL_ZLIB_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: EXTERNAL_tinyxml_DIR
EXTERNAL_tinyxml_DIR-ADVANCED:INTERNAL=1
//Details about finding BISON
FIND_PACKAGE_MESSAGE_DETAILS_BISON:INTERNAL=[/usr/bin/bison][v3.0.2()]
//Test HAS_FLAG_-Wl-rpath
HAS_FLAG_-Wl-rpath:INTERNAL=
//Test HAS_FLAG_-std=c11
HAS_FLAG_-std=c11:INTERNAL=1
//ADVANCED property for variable: MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ACCESSBYITK_DIMENSIONS
MITK_ACCESSBYITK_DIMENSIONS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_CXX_FLAGS
MITK_ADDITIONAL_CXX_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_CXX_FLAGS_DEBUG
MITK_ADDITIONAL_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_CXX_FLAGS_RELEASE
MITK_ADDITIONAL_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_C_FLAGS
MITK_ADDITIONAL_C_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_C_FLAGS_DEBUG
MITK_ADDITIONAL_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_C_FLAGS_RELEASE
MITK_ADDITIONAL_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_EXE_LINKER_FLAGS
MITK_ADDITIONAL_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_MODULE_LINKER_FLAGS
MITK_ADDITIONAL_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_ADDITIONAL_SHARED_LINKER_FLAGS
MITK_ADDITIONAL_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_BUILD_ALL_APPS
MITK_BUILD_ALL_APPS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_BUILD_ALL_PLUGINS
MITK_BUILD_ALL_PLUGINS-ADVANCED:INTERNAL=1
//STRINGS property for variable: MITK_BUILD_CONFIGURATION
MITK_BUILD_CONFIGURATION-STRINGS:INTERNAL=Custom;Default;WorkbenchRelease;mitkNavigationModules;All;mitkDiffusion
//ADVANCED property for variable: MITK_ENABLE_PIC_READER
MITK_ENABLE_PIC_READER-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_ANN
MITK_USE_ANN-ADVANCED:INTERNAL=1
//Use Boost
MITK_USE_Boost:INTERNAL=TRUE
//ADVANCED property for variable: MITK_USE_CppUnit
MITK_USE_CppUnit-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_Eigen
MITK_USE_Eigen-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_GDCM
MITK_USE_GDCM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_GLEW
MITK_USE_GLEW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_GLUT
MITK_USE_GLUT-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_HDF5
MITK_USE_HDF5-ADVANCED:INTERNAL=1
//Use ITK
MITK_USE_ITK:INTERNAL=TRUE
//ADVANCED property for variable: MITK_USE_Numpy
MITK_USE_Numpy-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_PCRE
MITK_USE_PCRE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_Qwt
MITK_USE_Qwt-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_Raptor2
MITK_USE_Raptor2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_Rasqal
MITK_USE_Rasqal-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_USE_SWIG
MITK_USE_SWIG-ADVANCED:INTERNAL=1
//Use VTK
MITK_USE_VTK:INTERNAL=TRUE
//Use ZLIB
MITK_USE_ZLIB:INTERNAL=FALSE
//ADVANCED property for variable: MITK_USE_tinyxml
MITK_USE_tinyxml-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_VTK_DEBUG_LEAKS
MITK_VTK_DEBUG_LEAKS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_WHITELIST
MITK_WHITELIST-ADVANCED:INTERNAL=1
//STRINGS property for variable: MITK_WHITELIST
MITK_WHITELIST-STRINGS:INTERNAL=None;Minimal
//ADVANCED property for variable: MITK_WHITELISTS_EXTERNAL_PATH
MITK_WHITELISTS_EXTERNAL_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MITK_WHITELISTS_INTERNAL_PATH
MITK_WHITELISTS_INTERNAL_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: StringDefs.h_FILE
StringDefs.h_FILE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: tcpd.h_FILE
tcpd.h_FILE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: tiff.h_FILE
tiff.h_FILE-ADVANCED:INTERNAL=1
------------------------------------------------------------------------------
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