Hi Ellankavi, unless I am mistaken the generation should result in one entry in the datamanager?
Just to be sure we are talking of the same thing, here the workflow I am looking at: 1. Start MITK Diffusion 2. Click on "Start Simulation" in the Signal Generation tab 3. Draw two circles in the top/bottom slice of the dummy image in the Fiber Definition tab 4. Select the dummy image and the fiber bundle and click "Start Simulation" in the Signal Generation tab 5. You now should have a diffusion image (in my case Bundle_0_D12-12-3_S2-2-2_b1000_StickBall_RELAX) 6. You can slide through the diffusion image directions using the Channel slider below the datamanager You can now save the diffusion image by right click->Save on it. If you select "Diffusion weighted image" as type and change the extension to .fslgz it will be saved nifti conform (basically .fslgz is a renamed .nii.gz and has the necessary meta files (bvecs and bvals)). The custom file extension was necessary for our old reader/writer system to signal it being a diffusion weighted image. That file will contain all directions and b-values. Best, Caspar Von: Ramasamy, Ellankavi [mailto:ellankavi.ramas...@ipa.fraunhofer.de] Gesendet: Dienstag, 13. September 2016 12:25 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] [Fiberfox] Save fiber bundle as *.nii.gz Hello, I'm working with Fiberfox v2014.10 and I've a question regarding saving fiber bundles. I'm creating a phantom diffusion image with 12 gradient directions. After creating the fiber bundle, instead of scrolling through each of the 13 (12 gradients + 1 b0 image), right-clicking on the fiber bundle and saving them as *.nii file, is there a way I can save *ALL* the 13 diffusion images in one go? Thanks Warm regards, Ellankavi
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