Hi,
On the last test I made I used the source code cloned from
https://phabricator.mitk.org/source/mitk.git today (after you merged
the patch into the master), with no modification nor additional code.
I proceeded to the following build steps:
- Switched on MITK_USE_SOFA in the superbuild (which forced 3
boost libraries on), configured twice, generated the solution, and
built project ALL_BUILD in debug mode
- Switched in CMake to the MITK-build directory to switch both
MITK_BUILD_org.mitk.simulation and
MITK_BUILD_org.mitk.gui.qt.simulation plugins on, configured and
generated.
- I opened the solution directly from CMake, then built and run
MITKWorkbench.
All projects are built successfully (including MitkWorkbench without
any error, but I encounter an error when running MitkWorkbench (in
Debug mode). I also tried to use the /BlueBerry.clean argument, with
the same result.
When I run MitkWorkbench, a pop-up window appears with the following text:
-------------------------------------------------------------------------------------------------------------------------
Exception thrown: read access violation.
this-> was 0x7FFF33F669E8
If there is a handler for this exception, the program may be safely
continued.
-------------------------------------------------------------------------------------------------------------------------
I encounter the error before the interface is visible, and it occurs
when the plugins are being loaded. Here is the call stack when the
application crashes:
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 103
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 473
[External Code]
SofaCore_1_0d.dll!boost::checked_delete<sofa::core::ObjectFactory::ClassEntry>(sofa::core::ObjectFactory::ClassEntry
* x) Line 34
SofaCore_1_0d.dll!boost::detail::sp_counted_impl_p<sofa::core::ObjectFactory::ClassEntry>::dispose()
Line 79
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 104
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 473
[External Code]
SofaCore_1_0d.dll!sofa::core::ObjectFactory::~ObjectFactory() Line 37
[External Code]
Qt5Cored.dll!QLibraryPrivate::unload_sys() Line 151
Qt5Cored.dll!QLibraryPrivate::unload(QLibraryPrivate::UnloadFlag flag)
Line 552
Qt5Cored.dll!QPluginLoader::unload() Line 256
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa, QSqlQuery * query) Line 491
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa) Line 400
CTKPluginFramework.dll!ctkPluginStorageSQL::insertPlugin(const QUrl &
location, const QString & localPath) Line 378
CTKPluginFramework.dll!ctkPlugins::install(const QUrl & location,
QIODevice * in) Line 119
CTKPluginFramework.dll!ctkPluginContext::installPlugin(const QUrl &
location, QIODevice * in) Line 101
CTKPluginFramework.dll!ctkPluginFrameworkLauncherPrivate::install(const
QUrl & pluginPath, ctkPluginContext * context) Line 238
CTKPluginFramework.dll!ctkPluginFrameworkLauncherPrivate::loadBasicPlugins()
Line 335
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::startup(QRunnable *
endSplashHandler) Line 522
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::run(QRunnable *
endSplashHandler, const QVariant & argument) Line 423
MitkAppUtil.dll!mitk::BaseApplication::main(const
std::vector<std::basic_string<char,std::char_traits<char>,std::allocator<char>
>,std::allocator<std::basic_string<char,std::char_traits<char>,std::allocator<char>
> > > & args) Line 701
PocoUtild.dll!Poco::Util::Application::run() Line 333
MitkAppUtil.dll!mitk::BaseApplication::run() Line 824
MitkWorkbench.exe!main(int argc, char * * argv) Line 41
[External Code]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
The code crashes when a call is made to method insertArchive in
ctkPluginStorageSQL.cpp, relatively to the simulation plugin. This
triggers a call to QPluginLoader::unload() method, and finally results
in a crash when calling release() method of a Boost smart pointer.
I'll keep investigating but at the moment I don't know why this happens.
I certainly can provide you with more details if you need some.
Best,
Camille
------------------------------------------------------------------------
*From: *"Stefan Dinkelacker" <s.dinkelac...@dkfz-heidelberg.de>
*To: *"Camille Krewcun" <camille_krew...@orange.fr>
*Cc: *mitk-users@lists.sourceforge.net, "Federico Milano"
<fmil...@gmail.com>
*Sent: *Jeudi 23 Février 2017 17:42:30
*Subject: *AW: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi, I tested successfully on Windows 10 as well. I need more
information to be able to guess what's going on. Did you modify or add
code? What's the call stack? Does it work by simply start the
Workbench with a /BlueBerry.clean argument? When does it crash?
Best,
Stefan
________________________________
Von: Camille Krewcun <camille_krew...@orange.fr>
Gesendet: Donnerstag, 23. Februar 2017 16:01
An: Dinkelacker, Stefan
Cc: mitk-users@lists.sourceforge.net; Federico Milano
Betreff: Re: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi
Thanks for your messages, and for the patch. I had encountered the
MSVC related error you mentionned before (snprintf, hash_map, and
eigen) but hadn't gone further.
However I think that the first problem I mentioned with this topic is
not related to the compiler version, nor to these problems.
I've just tried to compile (with MSVC 2015) and execute MITK with the
patch you merged earlier today into master, and although the building
process is now performed successfully, I still encounter the same
error (memory access violation) when trying to execute the Workbench.
In addition to that, a colleague of mine successfully reproduced this
problem on another computer with the following configuration:
- Windows 10 (version 1607, anniversary update)
- CMake v3.5.2
- Qt v5.6.2
- MITK 2016.11.0 release sources
- MSVC 2013 Community Update 5
You mentioned that you tested several configurations today: did one of
these include a Windows 10 environment?
Best,
Camille
________________________________
From: "Stefan Dinkelacker" <s.dinkelac...@dkfz-heidelberg.de>
To: "Federico Milano" <fmil...@gmail.com>, "Camille Krewcun"
<camille_krew...@orange.fr>
Cc: mitk-users@lists.sourceforge.net
Sent: Jeudi 23 Février 2017 12:30:04
Subject: RE: [mitk-users] [Simulation plugin] Execution error at
plugin loading
FYI, I tested it today on several configurations and it worked. Merged
into master.
Best,
Stefan
-----Original Message-----
From: Dinkelacker, Stefan [mailto:s.dinkelac...@dkfz-heidelberg.de]
Sent: Donnerstag, 23. Februar 2017 01:22
To: Federico Milano; Camille Krewcun
Cc: mitk-users@lists.sourceforge.net
Subject: Re: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi,
I just gave it a shot with MSVC 2015 and pushed a branch for this[1].
Seems like it is working now but it needs more testing.
Best,
Stefan
[1] https://phabricator.mitk.org/T22551
________________________________
Von: Federico Milano <fmil...@gmail.com>
Gesendet: Montag, 20. Februar 2017 19:16
An: Camille Krewcun; Dinkelacker, Stefan
Cc: mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi Stefan, Camille,
The issues are not OS related but compiler related. VS 2015 has issues
with snprintf. Once you solve them you (there's a macro to disable
that check) you will find issues with the private eigen version of
SOFA. Those issues are much harder to solve.
If you use Vs 2013 you won't find these issues.
Federico
El El lun, 20 de feb. de 2017 a las 07:25, Dinkelacker, Stefan
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
escribió:
Hi,
it was Windows 8.1. Regarding Windows 10, we only have configurations
with VS2015, but not VS2013. We found some compile errors regarding
snprintf on these machines today, which I will investigate later today
or tomorrow.
Best,
Stefan
From: Camille Krewcun
[mailto:camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>]
Sent: Freitag, 17. Februar 2017 17:04
To: Dinkelacker, Stefan
Cc:
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Subject: Re: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi,
As a follow-up to my previous mail, here is what I could give a deeper
look to:
- I started the building process from the beginning on another
computer with the same configuration, except for the OS which was
Microsoft Windows 7 (service pack 1, x64). I didn't encounter the same
error and was able to successfully launch the Workbench with the
simulation plugin on.
- I tried to suppress everything related to MITK on the computer
running under Windows 10 and started once more, in case there would
have been a conflict I would not have been aware of. Once again I was
able to go through all the building process without any error, but
encountered the same problem (memory access violation) when running
the Workbench.
- I finally updated my Windows 10 version with the anniversary
update (version 1607, build 14393), but this was also unsuccessful.
Considering these elements I would say the problem is likely to come
either from windows 10 or from conflicting files on my computer I
couldn't find.
Were you running on Windows 10 when you tried to reproduce the error?
Or do you know if a test has been made recently on Windows 10 (I saw
it was part of the Tier 2 supported platforms)?
Otherwise the problem must be specifically related to something on my
computer.
Regards,
Camille
________________________________
From: "Camille Krewcun"
<camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>>
To: "Stefan Dinkelacker"
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
Cc:
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Sent: Mercredi 1 Février 2017 16:18:41
Subject: Re: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi Stefan,
Thanks for your answer!
I did exactly the same as you described in the first two lines of your
message (and encountered the same forced switch on for the Boost
libraries).
As for the things that could have gone wrong:
- I didn't encounter any error during the superbuild (although
warnings were triggered), and everything was built successfully
- I used the debug batch file (StartVS_debug.bat) to launch the
Workbench after compiling in Debug mode. I also tried to do all the
building process in Release mode (also following the same steps as you
described), using this time the release batch file, and apparently
encountered what seems to be the same error.
- I checked that both simulation plugins (org.mitk.simulation and
org.gui.qt.simulation) were indeed switched on
I finally tried to delete all the Workbench folders in the AppData
directory but I still encounter the same error, although not with the
same callstack as plugins were directly loaded (and not updated).
However a call to the insertArchive method is also made during this
loading process, and it triggers the error when used relatively to the
org.mitk.simulation plugin.
I made a lot of manipulations relatively to MITK lately, and I'm not
sure that I'm not missing anything. I'll try to reproduce the problem
in a "clean" machine, starting from 2016.03 sources only, and going
through the entire building process.
I'll keep you updated if I encounter the error once more.
Best,
Camille
________________________________
From: "Stefan Dinkelacker"
<s.dinkelac...@dkfz-heidelberg.de<mailto:s.dinkelac...@dkfz-heidelberg.de>>
To: "Camille Krewcun"
<camille_krew...@orange.fr<mailto:camille_krew...@orange.fr>>,
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Sent: Mercredi 1 Février 2017 15:15:18
Subject: RE: [mitk-users] [Simulation plugin] Execution error at
plugin loading
Hi,
I have just done a superbuild with your setup (2016.03, CMake 3.7, VS
2013 Community Update 5, and Qt 5.4.2). I switched on MITK_USE_SOFA in
the superbuild. Boost with a few libraries were force switched on
then. I configured again and generated the superbuild solution. I
built the project MITK-Configure in Debug Configuration, and then
switched in CMake to the MITK-build directory to switch on the two
simulation plugins. Configure/Gerenrate. I used the debug batch file
(!) to open the MITK solution and built/run MITKWorkbench. So
everything works for me.
Thing that might have gone wrong in your case:
- Did you check, that the superbuild was completely successful?
- Did you use the right batch file to open the MITK solution?
- Did you switch on both simulation plugins?
- If you’re sure that everything was built successfully, you can
either go to %APP_DATA%/../Local/DKFZ and delete all the Workbench
folders to force a clean start of the Workbench, or pass
/BlueBerry.clean once as argument to the Workbench, which will do the
same (remember to remove the argument later). You can add the argument
in the properties of the MITKWorkbench project (Configuration
Properties -> Debugging -> Command Arguments).
Best
Stefan
From: Camille Krewcun [mailto:camille_krew...@orange.fr]
Sent: Dienstag, 31. Januar 2017 17:54
To:
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Subject: [mitk-users] [Simulation plugin] Execution error at plugin
loading
Hello everyone,
I encounter an execution error (memory access violation) when trying
to launch MITK Workbench with the simulation plugin.
This error seems to result from a call to the insertArchive method of
ctkPluginStorageSQL (relatively to org.mitk.simulation plugin),
through the updateDB method. However I have difficulties to trace back
the exact cause of the problem through the plugin loading process.
Has this situation been encountered before?
I leave more information concerning the error and my environment below.
Best regards,
Camille
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Build information:
Working on Microsoft Windows 10 Professional (original version 10240)
MITK 2016.03 release sources
CMake 3.7.0
Visual Studio 2013 Community (Update 5)
Qt 5.4.2
All third party libraries automatically downloaded and built during
MITK superbuild
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Error message:
"Unhandled exception at 0x00007FFF19064FF5 (SofaCore_1_0d.dll) in
MitkWorkbench.exe: 0xC0000005: Access violation reading location
0x00007FFF0A90F530."
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Callstack when error is triggered:
> SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line
> 103
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 471
[External Code]
SofaCore_1_0d.dll!boost::checked_delete<sofa::core::ObjectFactory::ClassEntry>(sofa::core::ObjectFactory::ClassEntry
* x) Line 34
SofaCore_1_0d.dll!boost::detail::sp_counted_impl_p<sofa::core::ObjectFactory::ClassEntry>::dispose()
Line 79
SofaCore_1_0d.dll!boost::detail::sp_counted_base::release() Line 104
SofaCore_1_0d.dll!boost::detail::shared_count::~shared_count() Line 471
[External Code]
SofaCore_1_0d.dll!sofa::core::ObjectFactory::~ObjectFactory() Line 37
[External Code]
Qt5Cored.dll!QLibraryPrivate::unload_sys() Line 150
Qt5Cored.dll!QLibraryPrivate::unload(QLibraryPrivate::UnloadFlag flag)
Line 549
Qt5Cored.dll!QPluginLoader::unload() Line 256
CTKPluginFramework.dll!ctkPluginStorageSQL::insertArchive(QSharedPointer<ctkPluginArchiveSQL>
pa, QSqlQuery * query) Line 491
CTKPluginFramework.dll!ctkPluginStorageSQL::updateDB() Line 333
CTKPluginFramework.dll!ctkPluginStorageSQL::open() Line 179
CTKPluginFramework.dll!ctkPluginStorageSQL::ctkPluginStorageSQL(ctkPluginFrameworkContext
* framework) Line 64
CTKPluginFramework.dll!ctkPluginFrameworkContext::init() Line 161
CTKPluginFramework.dll!ctkPluginFrameworkPrivate::init() Line 56
CTKPluginFramework.dll!ctkPluginFramework::start(const
QFlags<enum ctkPlugin::StartOption> & options) Line 112
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::startup(QRunnable *
__formal) Line 521
CTKPluginFramework.dll!ctkPluginFrameworkLauncher::run(QRunnable *
endSplashHandler, const QVariant & argument) Line 425
MitkAppUtil.dll!mitk::BaseApplication::main(const
std::vector<std::basic_string<char,std::char_traits<char>,std::allocator<char>
>,std::allocator<std::basic_string<char,std::char_traits<char>,std::allocator<char>
> > > & args) Line 686
PocoUtild.dll!Poco::Util::Application::run() Line 333
MitkAppUtil.dll!mitk::BaseApplication::run() Line 784
MitkWorkbench.exe!main(int argc, char * * argv) Line 41
[External Code]
------------------------------------------------------------------------------
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