Hi Stefan,
Thank you very very much!!
I think your guess was very right. So in ccmake I actually manually set all
of the qt libraries to the 5.9.1 version I installed.
Actually now it does not give me that error but i gives me the following:
[ 20%] Linking CXX shared library ../../lib/libMitkDICOMReader.so
/usr/bin/cmake: /home/marco/installations/anaconda2/lib/libcurl.so.4: no
version information available (required by /usr/bin/cmake)
/usr/bin/ld: cannot find -ltiff
collect2: error: ld returned 1 exit status
make[5]: *** [lib/libMitkDICOMReader.so] Error 1
make[4]: *** [Modules/DICOMReader/CMakeFiles/MitkDICOMReader.dir/all] Error
2
make[3]: *** [all] Error 2
make[2]: *** [CMakeFiles/MITK-build] Error 2
make[1]: *** [CMakeFiles/MITK-build.dir/all] Error 2
make: *** [all] Error 2
I understand that the linker "ld" is not finding -ltiff. Actually I thought
I simply had to indicate where to find it in my laptop so I modified the
.bashrc by adding
export
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/marco/installations/anaconda2/lib
to my .bashrc which now is
# added by Anaconda2 4.3.0 installer
export PATH="/home/marco/installations/anaconda2/bin:$PATH"
export
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/marco/installations/anaconda2/lib
Indeed in /home/marco/installations/anaconda2/lib there is the libtiff.so.
However, no luck..
Do you have any ideas?
Thank you again,
Marco
2017-07-25 15:41 GMT+02:00 Dinkelacker, Stefan <
s.dinkelac...@dkfz-heidelberg.de>:
> Regarding the build issue I can only guess that you mix two versions of
> Qt, like system Qt that comes with your Linux distribution and the manual
> installed version. You most probably need the latter one. Make sure that
> you check both “Web Engine” and “QtScript (deprecated)”. These modules are
> unchecked by default. Before the first configuring with CMake, add the
> CMake-Variable CMAKE_PREFIX_PATH to the Cache, pointing to the manually
> installed Qt location, i.e., something like “/opt/Qt/5.9.1/gcc_64”. Note
> that it is the base path, not the bin path. This works only if you do it
> BEFORE the first configuring. Otherwise, some of the Qt-Variables will be
> populated by the system-version of Qt again and again.
>
>
>
> *From:* Neher, Peter
> *Sent:* Dienstag, 25. Juli 2017 15:30
> *To:* Marco Pizzolato; Dinkelacker, Stefan
> *Cc:* mitk-users@lists.sourceforge.net
> *Subject:* AW: [mitk-users] Error during build of MITK
>
>
>
> @Stefan I think the issue is independent of diffusion. He simply can't
> build the current MITK master.
>
>
>
> The not working diffusion-application is an independent issue.
>
>
>
> Peter
>
>
> ------------------------------
>
> *Von:* Marco Pizzolato <pizzo86...@gmail.com>
> *Gesendet:* Dienstag, 25. Juli 2017 13:33
> *An:* Dinkelacker, Stefan
> *Cc:* mitk-users@lists.sourceforge.net
> *Betreff:* Re: [mitk-users] Error during build of MITK
>
>
>
> Dear Stefan,
>
> Thank you very much for your reply.
>
> I have downloaded the software at the link you specified, which is a
> running version of MITK. When I run it in the shell
>
> ./MitkDiffusion.sh
>
> I get the following error
>
> /home/marco/Installations/MITK-Diffusion-2017.07-linux64/bin/MitkDiffusion:
> relocation error: /home/marco/Installations/MITK-Diffusion-2017.07-
> linux64/bin/libitkvnl-4.11.so.1: symbol _ZTVNSt7__cxx1115basic_
> stringbufIcSt11char_traitsIcESaIcEEE, version GLIBCXX_3.4.21 not defined
> in file libstdc++.so.6 with link time reference
>
> Anyway, I had tried to compile from source with the latest version of MITK
> and still the same exact error occurs. Can it be something that has to do
> with standard configuration requirements that I do not have?
>
> Thank you very much,
>
> Marco
>
>
>
>
>
> 2017-07-25 12:08 GMT+02:00 Dinkelacker, Stefan <s.dinkelacker@dkfz-
> heidelberg.de>:
>
> Hi,
>
>
>
> MITK Diffusion 14.10 is a rather old release which is probably still based
> on Qt 4. Did you notice that there is a very recent release of MITK
> Diffusion? - 17.07 [1]. You find the release announcement mail from Peter
> Neher in this mailing list (Mo, 17.07.).
>
>
>
> Best,
>
> Stefan
>
>
>
> [1] http://mitk.org/download/releases/MITK-Diffusion-2017.07/
>
>
> ------------------------------
>
> *Von:* Marco Pizzolato <pizzo86...@gmail.com>
> *Gesendet:* Dienstag, 25. Juli 2017 10:13
> *An:* mitk-users@lists.sourceforge.net
> *Betreff:* [mitk-users] Error during build of MITK
>
>
>
> Hi everybody,
>
> I am quite new in MITK so sorry for any eventual obvious thing I might be
> asking.
>
> I am trying to build (super-build) the MITK Diffusion version 14.10.02 on
> my laptop with Linux Mint 17 (Ubuntu 14.04), but I find some issues. This
> is what I do:
>
> 1. ccmake ../MITK
> 2. i updated g++ and gcc to the version 4.9
>
> 3. i figure out all of the dependencies, actually it asks always for
> Qt web engine path
>
> Could not find a package configuration file provided by
> "Qt5WebEngineWidgets" with any of the following names:
>
> Qt5WebEngineWidgetsConfig.cmake
> qt5webenginewidgets-config.cmake
>
> so I point it to the right folder.
>
>
>
> 4. when ccmake does not give me configuration errors I just press
> "g" to generate and close: here is a bit weired because it shows
> me no output (no text written after the end of the configuration)
>
> 5. then I do "make" and I get this issue
>
> [ 85%] Linking CXX shared library ../../../../bin/
> libCTKCommandLineModulesFrontendQtGui.so
> /usr/bin/ld: /home/marco/installations/
> anaconda2/lib/libQt5UiTools.a(quiloader.o): unrecognized relocation
> (0x2a) in section `.text'
> /usr/bin/ld: final link failed: Bad value
> collect2: error: ld returned 1 exit status
> make[8]: *** [bin/libCTKCommandLineModulesFrontendQtGui.so.0.1.0]
> Error 1
> make[7]: *** [Libs/CommandLineModules/Frontend/QtGui/CMakeFiles/
> CTKCommandLineModulesFrontendQtGui.dir/all] Error 2
> make[6]: *** [all] Error 2
> make[5]: *** [CTK-prefix/src/CTK-stamp/CTK-build] Error 2
> make[4]: *** [CMakeFiles/CTK.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [ep/src/CTK-stamp/CTK-build] Error 2
> make[1]: *** [CMakeFiles/CTK.dir/all] Error 2
> make: *** [all] Error 2
>
>
> do you have an idea of what can I do? I have tried many solutions I have
> found on google, such as installing missing packages, but nothing seems to
> work.
>
> Thank you very much in advance,
>
> Marco
>
>
>
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