Dear Fatih,
I guess the currently easiest way would indeed be to modify the mitkFreeSurferParcellationTranslator accordingly. The best way would be to write a new translator class. In my opinion it would be best to rewrite the translator to be more generic, but this might be a larger endeavor. Did you try to simply replace the names in FreeSurferParcellationTranslator::CreateNameTable() and the lookup table functions? Peter --------------------------------------------------------------------------------------------------- Dr. Peter F. Neher Division of Medical Image Computing Scientist German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany phone: +49 6221 42-2330 fax: +49 6221 42-2345 [email protected] www.dkfz.de<http://www.dkfz.de/> Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta VAT-ID No.: DE143293537 ________________________________ Von: Fatih SOĞUKPINAR <[email protected]> Gesendet: Freitag, 29. März 2019 17:51 An: [email protected] Betreff: [mitk-users] Using Schaefer Atlas Parcellation with MITK Dear MitK developers, I have cortical parcellation and segmentation for Schaefer 2018 atlas (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal) (7Networks_400 Parcellations) and I want to generate networks (s-networks and f-networks) by using MitK, according to these parcellations, Apperantly, I will need to modify mitkFreeSurferParcellationTranslator and mitkTransferFunctionProperty in my platform, so that it is going to take names of anatomical regions and colortable from Schaefer Atlas, rather than Destreiux Atlas. However, I am new to MitK and have difficulties at this point. Is there an easy way which you can offer for defining a new parcellation atlas ? I will need it both for visualization of the parcellation & segmentation and more importantly, for network generation. May it be also possible to define more atlases (e.g. 5 different atlases) by a simple and elegant way ? Thank you in advance and best regards.
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