Hi Yi Ming Lai,
you can find the command line applications in the installation folder. Are you using Windows or Linux? You are probably looking for the cmdapp "MitkFiberExtractionRoi". Regarding the fiber statistics, this information is available by right clicking on the respective fiber bundle and selecting "show details". I just added a command line app to print the same information of one ore multiple bundles to a text file. The new tool is called "MitkPrintFiberStatistics" and will be available in the next nightly installer tomorrow. You can input one bundle, a list of bundles or a folder containing fiber bundle files. Let me know if everything works as expected. Best, Peter --------------------------------------------------------------------------------------------------- Dr. Peter F. Neher Division of Medical Image Computing Scientist & Division Board Member German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany phone: +49 6221 42-2330 fax: +49 6221 42-2345 p.ne...@dkfz.de www.dkfz.de<http://www.dkfz.de/> Management Board: Prof. Dr. Michael Baumann, Ursula Weyrich VAT-ID No.: DE143293537 ________________________________ Von: Yi Lai <yi.l...@nottingham.ac.uk> Gesendet: Montag, 8. Juni 2020 17:44 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Command line interface Hello, Sorry if this is a silly question - how do I get access to the command line interface for MITK Diffusion? More specifically, I've used an ROI image to split a group of fiber bundles by label, resulting in several hundred sub-bundles. I would like to automatically save all of them without having to click through the GUI for each one. Also, I would like to extract statistics from each of them (e.g. number & mean length of fibres). Thank you! Yi Ming Lai Research Fellow School of Medicine University of Nottingham Room A38, Queen's Medical Centre Nottingham, NG7 2UH +44 (0) 115 8232874 | www.nottingham.ac.uk/medicine/<http://www.nottingham.ac.uk/medicine/> This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please contact the sender and delete the email and attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. Email communications with the University of Nottingham may be monitored where permitted by law.
_______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
