Dear Alfred,
thanks, and sorry for the late reply.
Using the code, you shared we were able to fix our problem!
Now the next step is to attach in the 3D visualization the US image to a probe
STL. (as suggested in the image ?)
Which is the best solution?
to apply the rotation on the image along the z-axis, we use this code
[......]
mitk::Vector3D rotationVector;
rotationVector[0] = 0.0;
rotationVector[1] = 0.0;
rotationVector[2] = 1.0;
float degree =eulerGammaDegrees;
mitk::RotationOperation *op =
new mitk::RotationOperation(mitk::OpROTATE ,
geometry->GetCenter(), rotationVector, degree);
geometry->ExecuteOperation(op);
delete op;
[...]
but we have problem with the crosshair. The image goes out of visualization .
Thanks in advance,
Andrea
________________________________
From: Alfred Franz <a.fr...@dkfz-heidelberg.de>
Sent: Wednesday, July 6, 2022 3:36 PM
To: Andrea Roberti <andrea.robe...@univr.it>; Alfred Franz
<a.fr...@dkfz-heidelberg.de>; mitk-users@lists.sourceforge.net
<mitk-users@lists.sourceforge.net>
Cc: Chiara Tenga <chiarate...@gmail.com>
Subject: Re: [mitk-users] Apply a transform to US Image
Dear Andrea,
this sounds as if there is a problem when setting the geometry to the image3d
(or with updating the object/view afterwards). Maybe you can compare your code
to the class mitk::USCombinedModality
(https://phabricator.mitk.org/source/mitk/browse/develop/Modules/US/USNavigation/mitkUSCombinedModality.cpp).
In line 75 of this file the geometry of an US image is modified as well. A
difference here is that the method "SetIndexToWorldTransform" is used instead
of "SetIndexToWorldTransformByVtkMatrix". You can try to convert your matrix to
a mitk::AffineTransform3D before and then call the same method as in the
example. Beside that I would also check if the object/view is updated after
modification of the geometry.
Best,
Alfred
Am 06.07.2022 um 12:45 schrieb Andrea Roberti:
Dear Alfred,
thanks for your reply.
We tried also with a "custom" transform created ad-hoc
[...]
vtkTransform *transform = vtkTransform::New();
transform->SetInput(transfActual);
transform->RotateZ(-90);
transform->Translate(55,0,0);
TelemedTransf->GetData()->GetGeometry()->SetIndexToWorldTransformByVtkMatrix(transform->GetMatrix());
m_DataStorage->Add(TelemedTransform);
[...]
image3d->GetGeometry()->SetIndexToWorldTransformByVtkMatrix(TelemedTransform->GetVtkTransform()->GetMatrix());
std::cout<<"1 -----TelemedTransform---------" <<std::endl;
for (int i=0; i<4; i++){
for (int j=0; j<4; j++){
std::cout <<
TelemedTransform->GetVtkTransform()->GetMatrix()->GetElement(i,j)<< " ";
}
std::cout<< std::endl;
}
std::cout<<" 3 -----image3d---------" <<std::endl;
for (int i=0; i<4; i++){
for (int j=0; j<4; j++){
std::cout <<
image3d->GetGeometry()->GetVtkTransform()->GetMatrix()->GetElement(i,j)<< " ";
}
std::cout<< std::endl;
}
----------------------------------------------------------------------------
The prints are exactly the same .
But as we said in the first email if the image comes from the device the
transform is not applied but loaded with the API it works.
Thanks
Andrea
________________________________
From: Alfred Franz
<a.fr...@dkfz-heidelberg.de><mailto:a.fr...@dkfz-heidelberg.de>
Sent: Wednesday, July 6, 2022 7:56 AM
To: Andrea Roberti <andrea.robe...@univr.it><mailto:andrea.robe...@univr.it>;
mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
<mitk-users@lists.sourceforge.net><mailto:mitk-users@lists.sourceforge.net>
Cc: Chiara Tenga <chiarate...@gmail.com><mailto:chiarate...@gmail.com>
Subject: Re: [mitk-users] Apply a transform to US Image
Dear Andrea,
did you check if the transform was correctly written to "TelemedTransform"? I
don't know the code you are using to communicate with the device, but I would
check this first.
If you are using the MITK classes for the Telemed device
(Modules\US\USHardwareTelemed), there is a known issue that the image is not
updated properly (see https://phabricator.mitk.org/T29131).
Best,
Alfred
Am 05.07.2022 um 10:14 schrieb Andrea Roberti:
Hello everyone,
We would like to apply a transform to an image received in real time from an
Ultrasound machine that is a 2D Image.
We can apply the same transform to a .nrrd image (saved offline) and we can see
that the transform was applied correctly on the image.
This is the piece of code we are using:
[.........]
mitk::Convert2Dto3DImageFilter::Pointer multiFilter2 =
mitk::Convert2Dto3DImageFilter::New();
mitk::Image::Pointer image2d =
dynamic_cast<mitk::Image* >(m_Node.at(i)->GetData());
multiFilter2->SetInput(image2d);
multiFilter2->Update();
mitk::Image::Pointer image3d;
image3d = multiFilter2->GetOutput();
TelemedTransform->GetVtkTransform()->Update();
image3d->GetGeometry()->SetIndexToWorldTransformByVtkMatrix(TelemedTransform->GetVtkTransform()->GetMatrix());
[.........]
If the input is given from the US machine the variable "image2d" is like the
code we shared and the transform is not applied.
Otherwise we use the Load method from mitk::IOUtil and it works.
What could be the problem?
Thanks in advance,
Andrea
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