When building MITK, resp. the MITK superbuild, you can set the CMake Variable MITK_BUILD_CONFIGURATION to PhenotypingRelease, which will set up all other build configuration settings accordingly.
Best, Stefan ________________________________ Von: Zhang, Kevin Sun Gesendet: Donnerstag, 9. Februar 2023 09:50 An: Dinkelacker, Stefan; mitk-users@lists.sourceforge.net Betreff: AW: [mitk-users] MITK Phenotyping; Discontiued Packages? Dear Stefan, thank you for your answer. May I ask what you mean by "MITK Phenotyping configuration of MITK"? Is the built configuration independent from the "surrounding" packages system? Best, Kevin ________________________________ Von: Dinkelacker, Stefan Gesendet: Donnerstag, 9. Februar 2023 09:39 An: Zhang, Kevin Sun; mitk-users@lists.sourceforge.net Betreff: AW: [mitk-users] MITK Phenotyping; Discontiued Packages? Dear K. Zhang, the official installers you found are indeed pretty much out of date nowadays. The developers of the Phenotyping feature left the department some time ago and as long as they do not take over for example by extracting and maintaining a dedicated MITK extension, we will probably sunset MITK Phenotyping, keeping only a few parts of it. That said, it should still be absolutely possible to build the MITK Phenotyping configuration of MITK, if this is an option for you. We cannot provide official installers anymore, though. Best regards, Stefan ________________________________ Von: Zhang, Kevin Sun <kevin.zh...@dkfz-heidelberg.de> Gesendet: Donnerstag, 2. Februar 2023 14:31 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] MITK Phenotyping; Discontiued Packages? Dear MITK-Team, I am using Ubuntu 20.04 and trying to use the MITK Phenotyping Package to extract radiomics features. Unfortunately, I encountered the following error messages when using the command line tool: MitkCLGlobalImageFeatures.sh The output files are empty. This is the terminal output I receive: zhang@T450s:~$ ~/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/MitkCLGlobalImageFeatures.sh -i ~/Radiomics/Img_Folder/t2.nrrd -m ~/Radiomics/t2/les1.nrrd -o ~/Radiomics/output -a true -log ~/Radiomics/logfile !Thu Feb 2 14:19:09 2023 0.090! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.090! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDICOMReaderServices.so failed. !0.134! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.134! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDiffusionCoreIO.so failed. !0.178! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.178! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkMultilabelIO.so failed. !0.181! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libpng12.so.0: cannot open shared object file: No such file or directory !0.181! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDiffusionIO.so failed. !0.183! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.183! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDicomRTIO.so failed. !0.186! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.186! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkCESTIO.so failed. Running Command Line Utility *Global Image Feature calculator* [0.223] Version: 1.22 [0.224] loading /home/zhang/Radiomics/Img_Folder/t2.nrrd via itk::ImageIOFactory... [0.225] ioRegion: ImageIORegion (0x7fff199a3210) Dimension: 3 Index: 0 0 0 Size: 640 640 29 [0.242] [96.7212, 94.3366, 6.33276] [0.242] [-103.279, -120.108, -33.4472] [0.242] used time geometry: ProportionalTimeGeometry [0.242] number of image components: 1 [0.242] ...finished! [0.252] loading /home/zhang/Radiomics/t2/les1.nrrd via itk::ImageIOFactory... [0.252] ioRegion: ImageIORegion (0x7fff199a3210) Dimension: 3 Index: 0 0 0 Size: 640 640 29 [0.322] [96.7212, 94.3366, 6.33276] [0.322] [-103.279, -120.108, -33.4472] [0.322] used time geometry: ProportionalTimeGeometry [0.322] number of image components: 1 [0.323] ...finished! [0.363] Start creating Mask without NaN zhang@T450s:~$ It does seem to me that these packages are discontinued: libicuuc.so.52 libpng12.so.0 Do you have any ideas how I can solve these two problems? Is MITK phenotyping discontinued? Thank you for your devotion to development of MITK. Best, K. Zhang
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